G248372


Basic Information

Item Value
gene id G248372
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 2398686 ~ 2398891 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU281901
GGTTACCAAAATTGTTTGTAAAAAAAAAAAAAAATGTTTTAATTTCACTACAGATGGAGGAAATTTTCAAAATGTTGAAGACCATCAGCAGTTATTTACTCCCATCATTATTTACTCCCCCTCAAGTTGTTCCAAACCTGTATGCATTTCTTTGTTCTGCTGTACACAAAGGAAGATATTTGGAAGAATGTTTGTAACCATGCAGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU281901 True 206 lncRNA 0.33 1 2398686 2398891

Neighbor

gene id symbol gene type direction distance location
CI01000058_02379628_02392648 NA coding upstream 5906 2378584 ~ 2392780 (+)
CI01000058_02348646_02354404 TMEM183A coding upstream 43601 2348615 ~ 2355085 (+)
CI01000058_02227590_02229507 MYOG coding upstream 168665 2227418 ~ 2230021 (+)
CI01000058_02052152_02085378 NA coding upstream 313231 2051963 ~ 2085455 (+)
CI01000058_02028188_02037502 MDM4 coding upstream 361058 2028149 ~ 2037628 (+)
CI01000058_02578534_02589495 NA coding downstream 179170 2578061 ~ 2590541 (+)
CI01000058_02592534_02600835 NA coding downstream 192302 2591193 ~ 2601755 (+)
CI01000058_02629861_02631891 NA coding downstream 230799 2629690 ~ 2632294 (+)
CI01000058_02635467_02636768 NA coding downstream 236285 2635176 ~ 2636985 (+)
CI01000058_02650808_02653235 NA coding downstream 251545 2650436 ~ 2653371 (+)
G248356 NA non-coding upstream 76774 2317218 ~ 2321912 (+)
G248173 NA non-coding upstream 117868 2042171 ~ 2280818 (+)
G248303 NA non-coding upstream 160728 2236910 ~ 2237958 (+)
G248208 NA non-coding upstream 305956 2090257 ~ 2092730 (+)
G248373 NA non-coding downstream 1494 2400385 ~ 2400642 (+)
G248374 NA non-coding downstream 2972 2401863 ~ 2402123 (+)
G248384 NA non-coding downstream 17362 2416253 ~ 2416481 (+)
G248404 NA non-coding downstream 56796 2455687 ~ 2456585 (+)
G248405 NA non-coding downstream 60156 2459047 ~ 2459397 (+)
CI01000058_01794468_01800421 KISS1 other upstream 600954 1794468 ~ 1800421 (+)
G247940 NA other upstream 942239 1452997 ~ 1456447 (+)
CI01000058_01280337_01289153 DNASE2B other upstream 1110416 1278592 ~ 1289874 (+)
CI01000058_00592498_00596709 NA other upstream 1801515 592331 ~ 597171 (+)
CI01000058_00435196_00437830 AGTRAP other upstream 1942942 434913 ~ 455744 (+)
G250039 NA other downstream 2295517 4694408 ~ 4697161 (+)
CI01000058_04864571_04888198 NA other downstream 2427485 4864571 ~ 4888216 (+)

Expression


Co-expression Network