G248404


Basic Information

Item Value
gene id G248404
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 2455687 ~ 2456585 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU281933
AGTACTATGCAGGTGCCATGAAATTCATTTATTCAAGAATACCATGGTATAGGTCCAAAAAAAAACATTTCGATACATTTCGGTAGGAATTAGATTTGATGTTGTTCATTTTTTAGAAGTGATTTCACTTTCCAAACATCCAGACGTCCACTTAATAGTTTCATCATAAGCCAATTTACCTGTTATTGGAAGTAAATTGAACACAAGAGCAGAAGTGAGTCCATAAGGAGCCATTTCAGTCCGTCATGTTATGTTCAAGCTTCATTGTGCAAGTTAAACAATTCCAGACCGAATCAAATCCATCACCGTCTGCCAGACTGAGGCAGTTTAAAGGAGCCACAATAAAATACACATTTCCTTCTTATTTTAAATCATTTTCTTCTCGTATGTATTTCTTGTAATAAGCTCCATTCTGTGCAAAATAATTCTAAGCACATTTATGCGATATGTGACCCTGGACCACAAAACCAGTCATAAGTCGCACGGGTATATTTGTAGCAACAGCCAACAATACATTGCATGGGTCAAAATTATCGATTTTTCTTTTATGCCAAAAATCATTAGGATATTAAGTAAAGATCATGTTCCATGAAGATATTTTGTAAATTTCCTACTGTAAATAAATCAAAAATTTATTTTTGTGAGTGGATATGCATTGCTAAGGACTTAATTTGGACAACTTTAAAGGCGATTTTCTCAATATTTACATTTTTTTGCACCCTCAGATTCCAGATTTTCAAATAGTTGTATCTCGGCTAAATATTGGAAATAAAATCTCAAAAATTAAAGCTGCAAGCAGCGATGAAAGGGCCCTCGCTCCCGGGGCCACCGCCACCCGGTGGCCTTAGGAAAATAGTGAATAGTGGGTGACATGCATGTAAGCGAGTAAATACAGGAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU281933 True 899 lncRNA 0.36 1 2455687 2456585

Neighbor

gene id symbol gene type direction distance location
CI01000058_02379628_02392648 NA coding upstream 62907 2378584 ~ 2392780 (+)
CI01000058_02348646_02354404 TMEM183A coding upstream 100602 2348615 ~ 2355085 (+)
CI01000058_02227590_02229507 MYOG coding upstream 225666 2227418 ~ 2230021 (+)
CI01000058_02052152_02085378 NA coding upstream 370232 2051963 ~ 2085455 (+)
CI01000058_02028188_02037502 MDM4 coding upstream 418059 2028149 ~ 2037628 (+)
CI01000058_02578534_02589495 NA coding downstream 121476 2578061 ~ 2590541 (+)
CI01000058_02592534_02600835 NA coding downstream 134608 2591193 ~ 2601755 (+)
CI01000058_02629861_02631891 NA coding downstream 173105 2629690 ~ 2632294 (+)
CI01000058_02635467_02636768 NA coding downstream 178591 2635176 ~ 2636985 (+)
CI01000058_02650808_02653235 NA coding downstream 193851 2650436 ~ 2653371 (+)
G248384 NA non-coding upstream 39206 2416253 ~ 2416481 (+)
G248374 NA non-coding upstream 53564 2401863 ~ 2402123 (+)
G248373 NA non-coding upstream 55045 2400385 ~ 2400642 (+)
G248372 NA non-coding upstream 56796 2398686 ~ 2398891 (+)
G248356 NA non-coding upstream 133775 2317218 ~ 2321912 (+)
G248405 NA non-coding downstream 2462 2459047 ~ 2459397 (+)
G248406 NA non-coding downstream 4331 2460916 ~ 2461548 (+)
G248432 NA non-coding downstream 43525 2500110 ~ 2500317 (+)
G248516 NA non-coding downstream 216790 2673375 ~ 2673662 (+)
CI01000058_01794468_01800421 KISS1 other upstream 657955 1794468 ~ 1800421 (+)
G247940 NA other upstream 999240 1452997 ~ 1456447 (+)
CI01000058_01280337_01289153 DNASE2B other upstream 1167417 1278592 ~ 1289874 (+)
CI01000058_00592498_00596709 NA other upstream 1858516 592331 ~ 597171 (+)
CI01000058_00435196_00437830 AGTRAP other upstream 1999943 434913 ~ 455744 (+)
G250039 NA other downstream 2237823 4694408 ~ 4697161 (+)
CI01000058_04864571_04888198 NA other downstream 2369791 4864571 ~ 4888216 (+)

Expression


Co-expression Network