XLOC_001014 (palb2)


Basic Information

Item Value
gene id XLOC_001014
gene name palb2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 9132335 ~ 9134045 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001613
CGCGGGACGGTTGAGCGTGGCAAAATATTCCGCAAGTCTTGTCAGATAAGTTTACAGGATGTCGGAGGAGATTCTCCATAACGAGGACAAAGAGACTCTGAGGAGAAGACTGGAGCAGTTGAAGCAAGAATATGAAAGGACGGCGCAAAGACTACAGagAGCAGAGCATCATGATGCCATTCGCAGACACAGACTTACACAGATTGAGTTGTCACAGACTTCTGAGCCGTCCTCTGCAGCTTCTTCCATGTCAACCTCAGATCATTTTGAAAACCATCAGAATCTGCAATTACAAACAAACAGAAACATCTCAGATTGTTCTGCTGTTGAGAAAACCCCTGCCTTCCAATTGCAACTAGCTGAGATTACATCTACACCGTCTTTGTACTCCCCTGCATGCAAGCGAAGCCCTGCTCACCGGCTCCGTTCAAAACGCAGTCGACTGCGCCTACA

Function

symbol description
palb2 Predicted to enable DNA binding activity. Predicted to be involved in double-strand break repair via homologous recombination. Predicted to be active in nucleoplasm. Is expressed in brain; eye; immature eye; lens; and pectoral fin fold. Human ortholog(s) of this gene implicated in Fanconi anemia complementation group N; breast cancer; and pancreatic cancer. Orthologous to human PALB2 (partner and localizer of BRCA2).

GO:

id name namespace
GO:0000724 double-strand break repair via homologous recombination biological_process
GO:0005654 nucleoplasm cellular_component
GO:0003677 DNA binding molecular_function

KEGG:

id description
ko03440 Homologous recombination
ko03460 Fanconi anemia pathway
ko03400 DNA repair and recombination proteins

ZFIN:

id description
ZDB-GENE-090313-43 Predicted to enable DNA binding activity. Predicted to be involved in double-strand break repair via homologous recombination. Predicted to be active in nucleoplasm. Is expressed in brain; eye; immature eye; lens; and pectoral fin fold. Human ortholog(s) of this gene implicated in Fanconi anemia complementation group N; breast cancer; and pancreatic cancer. Orthologous to human PALB2 (partner and localizer of BRCA2).

Ensembl:

ensembl_id ENSDARG00000076716

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001613 True 453 mRNA 0.48 5 9132335 9134045

Neighbor

gene id symbol gene type direction distance location
XLOC_001013 palb2 coding downstream 2199 9125023 ~ 9130136 (-)
XLOC_001012 ndufab1a coding downstream 8870 9118100 ~ 9123465 (-)
XLOC_001011 si:ch211-14k19.8 coding downstream 17301 9100447 ~ 9115034 (-)
XLOC_001010 NA coding downstream 49563 9081842 ~ 9082772 (-)
XLOC_001009 NA coding downstream 151664 8978905 ~ 8980671 (-)
XLOC_001015 NA coding upstream 4593 9138638 ~ 9139160 (-)
XLOC_001016 BX004779.2 coding upstream 23265 9157310 ~ 9162637 (-)
XLOC_001017 ern2 coding upstream 35762 9169807 ~ 9195760 (-)
XLOC_001018 BX004779.1 coding upstream 63814 9197859 ~ 9197966 (-)
XLOC_001019 gng13a coding upstream 93036 9227081 ~ 9228007 (-)
XLOC_001008 NA non-coding downstream 154372 8974500 ~ 8977963 (-)
XLOC_001002 NA non-coding downstream 507069 8612575 ~ 8625266 (-)
XLOC_001001 NA non-coding downstream 544976 8579155 ~ 8587359 (-)
XLOC_001023 AL954703.1 non-coding upstream 174226 9308271 ~ 9321931 (-)
XLOC_001024 NA non-coding upstream 286779 9420824 ~ 9422275 (-)

Expression


Co-expression Network