XLOC_010142


Basic Information

Item Value
gene id XLOC_010142
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 39624124 ~ 39627370 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021998
TCTGGCTTTTACCCAGGAACTCACAGGGGATCATCCTTCTGCACAGTCTGAGCAGAAACAGTGAAGTGTTGGGTCTCCAGCTGATTGAGTCTCTGCAGTGCCCGCTGTGCCGCTCTGGATGAATCTTCACTGTTTTTGTCTGTTGTGGACGCTGACGCCATGGCAACCTCTCTGGCGGAGTTCCTCATATCTTGAAAAGGGGAATGGAAACAAGAGGGGGAAAAACACTGCGATATTCCCACTAAAGCTCCTGGAAAACTGTGCTGGAAAAAGACAGAGATGAGCGGAGAGGATATCAGCCTGGAGCATAAATAAGAAAGTTACGTAAACCTATTGACAGTTTACAGATTTGGGGTATTTTCTGGCGTGACGAGCTTTGACTGTTTATGATATTCCAAGTCATTTAAAGAAGATTTGGCTCTCCGTGATGAGGTACAGTATGGGATCCTCATGCCGTTGTCGGTCATCGATCTGGCGCTCAGGAATTGAGATGGAGACTTGGCTTTTCCTGCAGAGGCTGCTGCTGTCTTTGAGAGGTATGTGATTGTCAGTTTGCATTAGCGAGAGAAGAGGTGCAGGTTGTTATAATAAGATGAAACCTGACACCATCGTATCAGTCTCTGTTACTTGCGAAAACATGGAGACCCTTAAAAATCGGCACACAGGTCTAGGCTAGATACGAAGTACCTCTTTTGAAGAGATCTACCAAAAAGACGAGACGATTTAAACATTCAGTTGGCCGACGTAAAACACACGCAGCCTACTTTTCATTGTGAAATAACATGATGAGGAATATTTCATTTCGCTGCAGTTACTGTTGTTTCTAGCTGTTATTT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021998 True 836 lncRNA 0.45 2 39624124 39627370

Neighbor

gene id symbol gene type direction distance location
XLOC_010141 CR855318.1 coding upstream 40456 39485608 ~ 39583668 (+)
XLOC_010140 osbpl10b coding upstream 238051 39271123 ~ 39386073 (+)
XLOC_010139 zgc:77056 coding upstream 378045 39242339 ~ 39246079 (+)
XLOC_010138 zdhhc3a coding upstream 390673 39196727 ~ 39233451 (+)
XLOC_010137 sybu coding upstream 455284 39146696 ~ 39168840 (+)
XLOC_010143 NA coding downstream 343 39627713 ~ 39628196 (+)
XLOC_010144 NA coding downstream 4240 39631610 ~ 39632068 (+)
XLOC_010145 NA coding downstream 229815 39857185 ~ 39901940 (+)
XLOC_010146 NA coding downstream 324987 39952357 ~ 39966375 (+)
XLOC_010147 NA coding downstream 344799 39972169 ~ 39977388 (+)
XLOC_010134 NA non-coding upstream 890182 38731787 ~ 38733942 (+)
XLOC_010122 CT025591.1 non-coding upstream 1602990 38021019 ~ 38021134 (+)
XLOC_010119 BX294107.1 non-coding upstream 1852524 37771483 ~ 37771600 (+)
XLOC_010118 NA non-coding upstream 1910487 37713264 ~ 37713637 (+)
XLOC_010117 NA non-coding upstream 1963513 37659520 ~ 37660611 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G115157 NA non-coding NC_056714.1 CM032083.1 21828216 ~ 21829531 (+)