G248625


Basic Information

Item Value
gene id G248625
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 3163775 ~ 3164114 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU282178
TTGTAGCCGGAGCTACTTCTCTCTGTTTATGTCTATGACGAGTCACACAGGTACTGTGCTACTCCGCTGTGGTTCCACCAGACCGGTCTAAAATAGTCTGAATATAAACACTTATTATAAGTGTACCATAATGATTCAGGATAAGACAAAAACACGGTTTGGAAAATGGATTCATGTTGTACATTCTCATTATATAATTTTTGTATATTTTGAACACAAAAAAAGTTACAGACAGCAGCTTTAATATAACAAATTTTACCTAAATTCACAATATTTTTGAAATTGTTAAAATATATTATGAAACATTTCACAGTATAGTCACTGAAAATGTCATACGGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU282178 True 340 lncRNA 0.32 1 3163775 3164114

Neighbor

gene id symbol gene type direction distance location
CI01000058_03066079_03101574 MAPKAPK2.S, MAPKAPK2, MAPKAPK2A coding upstream 62201 3066079 ~ 3101574 (+)
CI01000058_03034418_03038200 DYRK3 coding upstream 125431 3034418 ~ 3038344 (+)
CI01000058_02979997_03027744 RASSF5 coding upstream 135631 2979997 ~ 3028144 (+)
CI01000058_02964886_02978501 IKBKE coding upstream 184880 2964886 ~ 2978895 (+)
CI01000058_02911431_02958568 SRGAP2 coding upstream 205207 2911431 ~ 2958568 (+)
CI01000058_03169524_03172961 FMODA coding downstream 4931 3169045 ~ 3173702 (+)
CI01000058_03181624_03193630 SLC6A14 coding downstream 17306 3181420 ~ 3195924 (+)
CI01000058_03201861_03220295 TAF4A, TAF4 coding downstream 36868 3200982 ~ 3220724 (+)
CI01000058_03503653_03506062 NA coding downstream 339264 3503378 ~ 3506296 (+)
CI01000058_03644271_03645229 NA coding downstream 480157 3644271 ~ 3645229 (+)
G248624 NA non-coding upstream 333 3163089 ~ 3163442 (+)
G248623 NA non-coding upstream 914 3162613 ~ 3162861 (+)
G248622 NA non-coding upstream 11944 3151250 ~ 3151831 (+)
G248575 NA non-coding upstream 13392 3149945 ~ 3150383 (+)
G248560 NA non-coding upstream 22753 3136298 ~ 3141022 (+)
G248634 NA non-coding downstream 62613 3226727 ~ 3226953 (+)
G248636 NA non-coding downstream 63347 3227461 ~ 3227736 (+)
G248638 NA non-coding downstream 65005 3229119 ~ 3229342 (+)
G248572 NA non-coding downstream 73941 3238055 ~ 3250640 (+)
CI01000058_01794468_01800421 KISS1 other upstream 1366043 1794468 ~ 1800421 (+)
G247940 NA other upstream 1707328 1452997 ~ 1456447 (+)
CI01000058_01280337_01289153 DNASE2B other upstream 1875505 1278592 ~ 1289874 (+)
CI01000058_00592498_00596709 NA other upstream 2566604 592331 ~ 597171 (+)
CI01000058_00435196_00437830 AGTRAP other upstream 2708031 434913 ~ 455744 (+)
G250039 NA other downstream 1530294 4694408 ~ 4697161 (+)
CI01000058_04864571_04888198 NA other downstream 1662262 4864571 ~ 4888216 (+)

Expression


Co-expression Network