G248572


Basic Information

Item Value
gene id G248572
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 3238055 ~ 3250640 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU282108
TGGAGCAGGCATGATTGTAAGCTTCTCTGCAATGCAGGTTTTAACCATTATCCAGGGACAGAACGTACGAGACACACTTTCTTCCGCAAGATAAGACAAAAAATGAACGCTGCTGCATTTCTCATAGCCAAAGAATAGAACGTAAAACTTAAGAAAAAAATACAAAAGACAAACATATAAAAAGAGAATTTAAAAATCCTGCAGGATATAGACAAACACACTCGTACACACAAAAACCAAACAGGCCCAGACACTATCATTTAGCCCAACTCTGAGCTTGAAGAGCAGCAAATGTTTTAAAAAAAAAGTATTTTACAGCATTTTAAACATTTTTGAATCTTTTTTTTTTTTGTTTGCTTTTTTATTTTTTCAGATTATATTTATTCCGTATGGTGTATATTCTTTGCCAACTACTTTTCACATTCTGACCACAGAGGAACAAGTGCGAGAGATTTGAGACATTGTTTTGAAAGAAGTCATGCACGTATAATATTTTAATCAACTTATAAAGTTAGAAAAGGGGAATGTTCAAGACAAAAAAAGAAGGTTTCTTCTGATGCAGTCCTTTTAGAGTCGGGTTTCTTCAGCCATCACTTTTAGTCTCACTGTCTGGCAACTTGTCATGCCTAAATTACCTTTACAAATTGGAAACGCAACACAAAATCGTACAAGGCAGGCAAGAGTATGAGCTAAAAGGCATTCTCCAGTAATATTTTTTTCTTCTTTTAAAAAATAAAGACCTTGATTTTTTACACAACCATTATACAACATAACATTATATGGTCGTGGTCGGTCAAGTTTAAAAAAACAAAAACCAAAAAAAAAAAAAAATGATTTTTCGAATTGGATCACTGTACTTCATACGTTCCAATTTCTCATCAAGGGAAAATGAGATTTCTTAAGGGAAAATGAGTCCTGTGTTTATCAACAAAAGTTTTGACAAAACATTCTCTGTTTCCTTTGTTTGTTTTCCACATAGTAATCAAAGAGGTGTTGTGCACCTTTAATGCAGGGATGAAAGGAAAGCAAAAGGTAGTCGAGAGGGGCATACAGGAACGGGGGAGTGTGTGCCCAACAGAAGAAACTTTTCAAAATGGCAACCGACCCTGAGATTGCAGGAGTCCGATACAAAACACACCACAAAAGGCACTTTATCAACAACAGTGCTTCTGTTCTACTGAAATTCAAGTTGAGAGAAAAAGTGTGTGGAACTCTCTTTAGTGATAAAGCAAAGGAAAAAAAAACGAGCGTGCGCACTCGTTTTTTTTATTCCCGCACGCTGAGAGTTCGCCGCCTCCGTTGCAACACGATTCCATCTTGAGCCTCTAGGCGGTCCGAGAGGAATGACAAAACAACACTGAAGAAACCACAATGCGAAATATTGTAAAAAGCCGTAAAATACTTGTGGATTGCAGCAAAGGTCCAGAGCAGGCTGCAGGGCAATATCCTCCCCTCTCAATGCCTCCGTAGCGTGCAGAGGAACTTTTGTTGAGAGATAATCAGCCCACGTTGGAGGCTTGGCGTATGGCTTCTCGATAAAACATCCGAGAAGCCAATTGTCCCTCCTGGCCCTCTCTGTTCCCCTCCGTCTTCCTCTAGTTCCCGACTTCAGTCCTCTCCCCCTCCTCCGTAGAGGTCCGCCAGCTTTTTGAAGCGAGGACCCCAGTCATTGAGGTAGTCGTAGTCCTGTTCCCCAGAGCTGGAGGAGTCCAGGGAGCTAACGGAGCCCGCTGTAGAGCCGCTGCCCTCGTAGTCAAACACCAGCAGGGAGTCGTAGGGAGGAGCGGTGGGGTCATTATCTGCCGCGCGCAGACCGTCAATGATGAACTCCCCGATGTCCCCTGGGTGTGGTACCGTTGGCCGAACAGGGTACTGAGATTCTAGGATAACGGGTCTTTCGTCCACTCTCCGCACACCTGCCGGCTTGCTCATTATGTGATCTAGAGACTCGGGCTGCTGCAGCTGACTCAGGTCATAGTCCTGATCTTCCTCTCCTCCTCCCTCTTCATCATACTTCAGAATATTATCTCTGACGTCATCCTCAGGGTCGATCAATAAGGGTTTTGTCTGACGCTCCTTCTCCCTTCGTTTCACCCACACCACAAAGAACAGAACCATACTGAGCAGTATAATGATACAGATGAGGATGGTGATGATAGCTCCAGTTCCCAGCCCGGCCACAGTCACCGCCCCGATCACAGTACAGTCTCCGTTTTCATCACAGGGACACACCTTCACCTTCAAGATGGAGGTGTTGGACAGGGGAGGGTTTCCGGAGTCGGAAACTAAAATGGGAACTCTGTACATGCCTGCCTCCAGGTACGGGATCCGCAGTTTCAACTGGGCATAATTCCCATTCAGGCGTGAAATGGTCCAGTTACGGCGGGCAGAAGAGGGGTAAGAGGGCAACTCAAAGACATATGGGCCGGCATTGGGTTCTGAATCTAAATCCGAAGCTGTGATGTTGACTGGATAGCCGTGTCGTGACCTCTCGCAAACCAGAGCCTCTTGAGGAACCAGGACAGGCACGTTGTCATTCACATCTATCAAATAAATCTGGAGAGTACCGGTTCCTGTGGCAGGAGGGGAACCGTTATCCACGGCCAAAAAGGTTGCTTCATATATATTCTTCTTCATATACGGCGACTCACGATCCAACACCGCCGTGGTGGTGATCCTTCCGTTGGTCCTGTTGATTTTCAGCCAGTTGGCTGGATCCGACAGTTTCGAGTACCTGATAGTCTGCTGGATGAAGCGGTCTGGATCCAGTGCAGCGAAAGTAGCCAGGGTGGTGTCAGCAGGCACTCCCTCTTCAAAGCGGATGATTTTAGGATTGGACGGGAACACGGGGGCCTCATTGACATCCAGCACTGTGATAGTAACACTAGCAGAGGAGGACGGCGAGGAGGGGATCCCACTGGCCAGGTGAGCTTGGTTCGACACCACCACCATCAGCATGAAGGCTCCGTTCCTCTCATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU282108 True 2979 lncRNA 0.46 7 3238055 3250640

Neighbor

gene id symbol gene type direction distance location
CI01000058_03201861_03220295 TAF4A, TAF4 coding upstream 17331 3200982 ~ 3220724 (+)
CI01000058_03181624_03193630 SLC6A14 coding upstream 42131 3181420 ~ 3195924 (+)
CI01000058_03169524_03172961 FMODA coding upstream 64353 3169045 ~ 3173702 (+)
CI01000058_03066079_03101574 MAPKAPK2.S, MAPKAPK2, MAPKAPK2A coding upstream 136481 3066079 ~ 3101574 (+)
CI01000058_03034418_03038200 DYRK3 coding upstream 199711 3034418 ~ 3038344 (+)
CI01000058_03503653_03506062 NA coding downstream 252738 3503378 ~ 3506296 (+)
CI01000058_03644271_03645229 NA coding downstream 393631 3644271 ~ 3645229 (+)
CI01000058_03645458_03659734 NA coding downstream 394818 3645458 ~ 3659762 (+)
CI01000058_03846867_03850723 SYNPR, NAMPTB coding downstream 596227 3846867 ~ 3850723 (+)
CI01000058_03889526_03896649 SYNPR coding downstream 638674 3889314 ~ 3896755 (+)
G248638 NA non-coding upstream 8713 3229119 ~ 3229342 (+)
G248636 NA non-coding upstream 10319 3227461 ~ 3227736 (+)
G248634 NA non-coding upstream 11102 3226727 ~ 3226953 (+)
G248625 NA non-coding upstream 73941 3163775 ~ 3164114 (+)
G248624 NA non-coding upstream 74613 3163089 ~ 3163442 (+)
G248778 NA non-coding downstream 281662 3532302 ~ 3532509 (+)
G248779 NA non-coding downstream 286657 3537297 ~ 3537525 (+)
G249635 NA non-coding downstream 333995 3584635 ~ 3584956 (+)
G249642 NA non-coding downstream 351073 3601713 ~ 3601941 (+)
CI01000058_01794468_01800421 KISS1 other upstream 1440323 1794468 ~ 1800421 (+)
G247940 NA other upstream 1781608 1452997 ~ 1456447 (+)
CI01000058_01280337_01289153 DNASE2B other upstream 1949785 1278592 ~ 1289874 (+)
CI01000058_00592498_00596709 NA other upstream 2640884 592331 ~ 597171 (+)
CI01000058_00435196_00437830 AGTRAP other upstream 2782311 434913 ~ 455744 (+)
G250039 NA other downstream 1443768 4694408 ~ 4697161 (+)
CI01000058_04864571_04888198 NA other downstream 1575736 4864571 ~ 4888216 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003404 cdh4 coding NC_007122.7 CM002895.2 20371179 ~ 20826753 (+)