G249642


Basic Information

Item Value
gene id G249642
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 3601713 ~ 3601941 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU283311
CGGAACGTAACCAGAAACGGAAACGAAATCAAATTTAATCGTTCTGAACAGAAAGGCTAATTTGAAATGGTTAATAACCGGTTAATAACGTTATTTTTTCGTTCTATTTAATATTTTGATTTGGCAGTCAACCAATCACGAATTCAAATAGTACAGCCTATGCAAATGTGACGCTGACGCATCCAAAGTGTGTGAAATGCCCGCGCTCAGGCTCTACAGTGAGTAAAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU283311 True 229 lncRNA 0.38 1 3601713 3601941

Neighbor

gene id symbol gene type direction distance location
CI01000058_03503653_03506062 NA coding upstream 95417 3503378 ~ 3506296 (+)
CI01000058_03201861_03220295 TAF4A, TAF4 coding upstream 380989 3200982 ~ 3220724 (+)
CI01000058_03181624_03193630 SLC6A14 coding upstream 405789 3181420 ~ 3195924 (+)
CI01000058_03169524_03172961 FMODA coding upstream 428011 3169045 ~ 3173702 (+)
CI01000058_03066079_03101574 MAPKAPK2.S, MAPKAPK2, MAPKAPK2A coding upstream 500139 3066079 ~ 3101574 (+)
CI01000058_03644271_03645229 NA coding downstream 42330 3644271 ~ 3645229 (+)
CI01000058_03645458_03659734 NA coding downstream 43517 3645458 ~ 3659762 (+)
CI01000058_03846867_03850723 SYNPR, NAMPTB coding downstream 244926 3846867 ~ 3850723 (+)
CI01000058_03889526_03896649 SYNPR coding downstream 287373 3889314 ~ 3896755 (+)
CI01000058_03915537_03946197 ATXN7 coding downstream 312981 3914922 ~ 3948073 (+)
G249635 NA non-coding upstream 16757 3584635 ~ 3584956 (+)
G248779 NA non-coding upstream 64188 3537297 ~ 3537525 (+)
G248778 NA non-coding upstream 69204 3532302 ~ 3532509 (+)
G248572 NA non-coding upstream 351073 3238055 ~ 3250640 (+)
G249644 NA non-coding downstream 15770 3617711 ~ 3617942 (+)
G249647 NA non-coding downstream 26712 3628653 ~ 3628956 (+)
G249649 NA non-coding downstream 34871 3636812 ~ 3637062 (+)
G249653 NA non-coding downstream 55136 3657077 ~ 3657276 (+)
G249660 NA non-coding downstream 77666 3679607 ~ 3679867 (+)
CI01000058_01794468_01800421 KISS1 other upstream 1803981 1794468 ~ 1800421 (+)
G247940 NA other upstream 2145266 1452997 ~ 1456447 (+)
CI01000058_01280337_01289153 DNASE2B other upstream 2313443 1278592 ~ 1289874 (+)
CI01000058_00592498_00596709 NA other upstream 3004542 592331 ~ 597171 (+)
CI01000058_00435196_00437830 AGTRAP other upstream 3145969 434913 ~ 455744 (+)
G250039 NA other downstream 1092467 4694408 ~ 4697161 (+)
CI01000058_04864571_04888198 NA other downstream 1224435 4864571 ~ 4888216 (+)

Expression


Co-expression Network