G249644


Basic Information

Item Value
gene id G249644
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 3617711 ~ 3617942 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU283313
TAATAACTGTATCAACGGTGTTATTCTGCTATCAAGGCTCAATCCTCCATTACTAGTTCTGAAATGACGTTTTGGAATTAGCATCGGAGGTTTGGGATGAGATGTGTAAGAAATTAGTCCCACACACAAGAGTGTTTTAAGGACAAAAACCTGTCAAATGTCTTGAAATACAACATCGGAACAGTGTCTTGAGGTGTGGTAACCGTAGTATAAGCGGAATAATTGACTCCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU283313 True 232 lncRNA 0.39 1 3617711 3617942

Neighbor

gene id symbol gene type direction distance location
CI01000058_03503653_03506062 NA coding upstream 111415 3503378 ~ 3506296 (+)
CI01000058_03201861_03220295 TAF4A, TAF4 coding upstream 396987 3200982 ~ 3220724 (+)
CI01000058_03181624_03193630 SLC6A14 coding upstream 421787 3181420 ~ 3195924 (+)
CI01000058_03169524_03172961 FMODA coding upstream 444009 3169045 ~ 3173702 (+)
CI01000058_03066079_03101574 MAPKAPK2.S, MAPKAPK2, MAPKAPK2A coding upstream 516137 3066079 ~ 3101574 (+)
CI01000058_03644271_03645229 NA coding downstream 26329 3644271 ~ 3645229 (+)
CI01000058_03645458_03659734 NA coding downstream 27516 3645458 ~ 3659762 (+)
CI01000058_03846867_03850723 SYNPR, NAMPTB coding downstream 228925 3846867 ~ 3850723 (+)
CI01000058_03889526_03896649 SYNPR coding downstream 271372 3889314 ~ 3896755 (+)
CI01000058_03915537_03946197 ATXN7 coding downstream 296980 3914922 ~ 3948073 (+)
G249642 NA non-coding upstream 15770 3601713 ~ 3601941 (+)
G249635 NA non-coding upstream 32755 3584635 ~ 3584956 (+)
G248779 NA non-coding upstream 80186 3537297 ~ 3537525 (+)
G248778 NA non-coding upstream 85202 3532302 ~ 3532509 (+)
G249647 NA non-coding downstream 10711 3628653 ~ 3628956 (+)
G249649 NA non-coding downstream 18870 3636812 ~ 3637062 (+)
G249653 NA non-coding downstream 39135 3657077 ~ 3657276 (+)
G249660 NA non-coding downstream 61665 3679607 ~ 3679867 (+)
G249662 NA non-coding downstream 65534 3683476 ~ 3701072 (+)
CI01000058_01794468_01800421 KISS1 other upstream 1819979 1794468 ~ 1800421 (+)
G247940 NA other upstream 2161264 1452997 ~ 1456447 (+)
CI01000058_01280337_01289153 DNASE2B other upstream 2329441 1278592 ~ 1289874 (+)
CI01000058_00592498_00596709 NA other upstream 3020540 592331 ~ 597171 (+)
CI01000058_00435196_00437830 AGTRAP other upstream 3161967 434913 ~ 455744 (+)
G250039 NA other downstream 1076466 4694408 ~ 4697161 (+)
CI01000058_04864571_04888198 NA other downstream 1208434 4864571 ~ 4888216 (+)

Expression


Co-expression Network