XLOC_010146


Basic Information

Item Value
gene id XLOC_010146
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 39952357 ~ 39966375 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00022002
GCCAGACTAAACTGCTACAAATAGACAAATTACAATCACGTGGTGAAAGCGACGGCCAAAGCACAGCAGCAGTGAATCATAAGCGGAGCTCTCGCACATGCTGAACTGCTGCCATGAAGATGAATGGGAACGCTAACGGATCATTCTCTCAGTTTCGTATGACTGGGATTGATAATCAGACACAGCAGCCAAGTACCTGCTACATTTGGAATCGAAACCCGCACCCTGCCACCTCCTGACCGCATTACTCAACCAGagccaaacaaataaatcagaATAATGATAATAGTCAAAATTCAAATCAGCCCGAGGAAACGGTCCGTGAAAGCAGCGGTGGTGACGTACATTTGGCTGCGTTGTGTGTGATTTCCACGACAGTGTTTAAATAGGTGCGGTCCCACTCCTCCTCGCAGAGCTCAGCGTCTGGATTACTTCATAATCCACACCATATTATGGGCCTGGCACTAATTGAAAGATAAATGAGTTTATTTGGGTTAAATCCATCACCGTGACACGAACCCAGAGGAGAGCGAGGGGGAGAAGAGATGAGAGCGCAAGAGGAAAGCTGAAGACGTTTGACTCTCGCCTTTGTATCAGCCAATTGGATCTGAAGAAACATCCGTGGTGAAACACAGATGAAGGATCGCAGatttctataccacaaaagtgttc
>TCONS_00022003
cagccgcaacccatctctgggaaacatccacatgcacacacaccccaAAAACACAAGGAATGTTAGTAACTTCTAAAAAATGATTGCATTTTGCAGCACTTTCAGTGTAAAATGTCATGTGAGTCGTCCTAAAAGCAGCTTTATGAATGCACAAATCATTTATGTGTATAGTTTTACCTGACACAGATGAATGTGAATCTGTATAATTACACTTGTTTTTGTATAAATCCAggcaaaagtgtttttaaaatgaagcTTTCTCAGTATTGACTTCCTGTTCATGGGactgttgtataaaagcaatatcacacaatAATCGTATACTTTCAGGAGCTCTCGCACATGCTGAACTGCTGCCATGAAGATGAATGGGAACGCTAACGGATCATTCTCTCAGTTTCGTATGACTGGGATTGATAATCAGACACAGCAGCCAAGTACCTGCTACATTTGGAATCGAAACCCGCACCCTGCCACCTCCTGACCGCATTACTCAACCAGagccaaacaaataaatcagaATAATGATAATAGTCAAAATTCAAATCAGCCCGAGGAAACGGTCCGTGAAAGCAGCGGTGGTGACGTACATTTGGCTGCGTTGTGTGTGATTTCCACGACAGTGTTTAAATAGGTGCGGTCCCACTCCTCCTCGCAGAGCTCAGCGTCTGGATTACTTCATAATCCACACCATATTATGGGCCTGGCACTAATTGAAAGATAAATGAGTTTATTTGGGTTAAATCCATCACCGTGACACGAACCCAGAGGAGAGCGAGGGGGAGAAGAGATGAGAGCGCAAGAGGAAAGCTGAAGACGTTTGACTCTCGCCTTTGTATCAGCCAATTGGATCTGAAGAAACATCCGTGGTGAAACACAGATGAAGGATCGCAGatttctataccacaaaagtgttcttggagctttgtatgaatACAGTTGAATCACCAAAGTCACAGatgaacgaaggtctcaggattggaacaacatgagggtgagtaatatatcatagaatttggaTGAACTAACCTTTTAAGTATGGCCTGCATATGAACCATTACTTTAATTGGTGGagtattttatcattcattcactttccttcagcttagtccctttattcatcaagggtcaccacagcgtaatgaatcgccaactttttcagcatatgttttatgcaacggatgcccttacagctgcaacccagtgctggaaaacacactcacacactacggtcagttttgtttattcagttcacctacagtgcatgtctgGGAAACCAGAGAAAACCCATACCAACATAGgtggaacatgcaaacttctcacagaaattTCAACTAACCcatctgggactcaaaccagcgaacttctcACTGTGAGACGACAGTCCTAACCACTGTGCCATTCTATTTTATCAATAAAACAAGTTTGCCAAATGAAtatcatgaaaaataaattacatgaGTATTATTTCAGAGAAAAATTATATTTTCcacaaaaattgtaaacaatttcCAACTTTTTATtgagtttgcattttttttttaaatactaatgtCAACTGAGAGCGTTTTGGAATGAAAACCGCTGTTTGAACGTGTCTGGATTAATGTAGACCACAGGGGTGTCCTGCTTCTGGAGGGCCAATGtctcagattttagctccaacataCATGCCTAGAAGTGAGTctgaagaccttgattagcttcaGGTGTGTGTAATTGCGGTTGGAGCTATACTCCTCAGTATAGTGGCTCTCCAAAAACATCTCTGGATGTAGATGTAGCCTTACTTTTTTCCCAAAATGTGCGGCAGCCAAAGAGGGTTAATGGTGTCTGAGTGCAGACGTCAGGGCTGGACACCATGCAGTCAGACACGGTTCACATTTTCCACTTCGTACACTGTCTCTTATTAACAACTGAAATGTGCAGAGCTTGTTGCACCgccagtgtgtgtgagtgtgtgacaaATCAAAACTGCTTCATGGAAATATGGCAAAGTtaaaggggaagaaaaaaaaacgtctGGGTTTTGAGAGCCACAGGCAGCATTGAGATCTGTCCCTAAATATAACTGCTGAACTTGTGAACTATAGAGGCTTGTGCAAAGCGTGAACTTTTTGCGGTGACAAAGGAGAACAAAACTGGCTTCTTTTTCTCACACTTTTAAAGACACAGatgtagtctttttttttttttcaaagtgggCCACATGACCCGTCCTGCATCATAAATTCACATACACAGCATCTGGCTTTGCTCCTGCCAAACGCTGAAAACCACAGGTGCATTTCTCAGAGACGAGTGAAATACATCCACATCTAATAGTCTAGAATTTTTTGGAAACATCAAAAACAGCCATGATCTCAGTGCACATACAGAAGATGATTCAACATTCTGTTTAACACATACAGTATACTACCTGATAACTacccatccaagttttaggaagaacaaataataaattgacttctagttaatcatttggtatcagaagttgattatatgaaaggca

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00022002 False 672 lncRNA 0.47 5 39952357 39964699
TCONS_00022003 True 2512 lncRNA 0.41 4 39962404 39966375

Neighbor

gene id symbol gene type direction distance location
XLOC_010145 NA coding upstream 50417 39857185 ~ 39901940 (+)
XLOC_010144 NA coding upstream 320289 39631610 ~ 39632068 (+)
XLOC_010143 NA coding upstream 324161 39627713 ~ 39628196 (+)
XLOC_010142 NA coding upstream 324987 39624124 ~ 39627370 (+)
XLOC_010141 CR855318.1 coding upstream 368689 39485608 ~ 39583668 (+)
XLOC_010147 NA coding downstream 5794 39972169 ~ 39977388 (+)
XLOC_010148 CT025588.2 coding downstream 45494 40011869 ~ 40011991 (+)
XLOC_010149 hint3 coding downstream 58508 40024883 ~ 40031779 (+)
XLOC_010150 trmt11 coding downstream 77298 40043673 ~ 40074145 (+)
XLOC_010151 CT025588.3 coding downstream 109170 40075545 ~ 40082056 (+)
XLOC_010134 NA non-coding upstream 1218415 38731787 ~ 38733942 (+)
XLOC_010152 NA non-coding downstream 116527 40082902 ~ 40114807 (+)
XLOC_010153 NA non-coding downstream 165089 40131464 ~ 40339027 (+)

Expression


Co-expression Network