G249664


Basic Information

Item Value
gene id G249664
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 3706832 ~ 3710079 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU283336
GAAAGAAGATACACCTAGGATGGCTTGAAGGTGAGTAAATCCTGGGATAATTTTCATTTTTGAGTGAACTATCCCTTTAAACTAAGATGCAGATCAGCACATTATGAGGTAGTTTTACTGGAAATTCTGGCAGAGAAAGTGTATGTTTGCAATGAAAGCTAAAGAGAAAGAAAATATGGGAAGTGTGGAAGGATTTGAGTAAGAACAGAAAGATACATTTGTGTTTGTGTTGTCTACCTCTTGACTGAGCTCCATGGCACATAGTTTGGCGGATTGGGCCTTGGCGTCCACCATGACATTGAACATGGTGCATATGGACTGAGGAACACGGAAGTCTGTGGTGCGGGGGCTCTTCTGCAACTTCACCTCAAAGGCTGCTCTGGTTTTTCACACAAGACTCGATCATGTCACTGGACATGAGTTTAAGTCGGCTCTCCAGGTGTTTAGCAAACTCTTCTTCTGGCCAGTGCAGGTCTCTTATGAATGTCTGCAGTGCATCCAGCTTCCAAAACAAGTCCTCTGAAGTCCCAGAACCATTACTGCCAACACCAAGAGACAGTCAGAGTGAGATACAGTATGTTATTTTAATCAAAGCAGCATATCAGGAAGGAAACGCTCCGGAAAAGGTCAGGAAGTAGGAAGGTCAGAGGGCAGGGGGTTGTTAAAGGAGACAAAGCCTGTTTCAAGTCCACACGCCATGGTGGCACATTTGTTTAACTTATTTTTTACCACTTCCCGATCATTGCAGAGTTGCCCTGGCGGCTTCAGATCAACCTCATTGACGATCGTTCCATGGAAAAAAATAAATGGTTAATCCTAAAACAAAATGATAAACAATCAGGCCTTACTTGGTTGTTTGAGTTCAGGTAAGGTAAAACATGCACAATGATGTCAAAGGAGAATTGCGGGATCACAAATAAAGGCTGTATGTGTATGAAGTAGCAGGAGAAGCTACAGTCCCAGACTTTCAACTGACCATACTAAAGCTATAGATCTGTTTGAATGGAGAAAATTTTAGCTCCACATGGTCCAAACTGAACCATAGAAAGAAAATAGAGACTGACTCTCACACCATTCCTCACAGCCTGAGTACAGTATCCTCAAACAGCCAGCAGGCCTATAGGCATCTTCAGTGGAAACATATTTTAAGATCGACTGAAGCAATGAGAGCTTCACACTGAAGCCAGATTTAGATAGAAGTCTCTAAGGGTGCTTTCACACCAGGTTCATTTGTACTGTAGTCGTCTAATACTCAACAGTCTCTCACATACAACAGCAGAAGGATGTGTAGAGATATTTACAGCTTGATTAATGGTGAGATTATTCATTTATTTGTTTATTTATTATGCTAGTATATCAAGCATAATAATCATACTCTTTTAAAACTGGCCAAATCAAATGTCAAACAAAACATTACTGATCCATTATGTGAAAAACACTGAAAACGACTATTGTGAGAAACAATGTAGATCAAAGTTTGGGTTACTCACACAACCAGTAAAGTCCTTTTAGAGTCTTGTATTTGGTTTCTACTGAAAGCAGATGCCTGTTGCTCTGAAGCTTGTACAGTGGGTACGGAAAGTATTCAGACCCCCTTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU283336 True 1600 lncRNA 0.41 2 3706832 3710079

Neighbor

gene id symbol gene type direction distance location
CI01000058_03645458_03659734 NA coding upstream 47070 3645458 ~ 3659762 (+)
CI01000058_03644271_03645229 NA coding upstream 61603 3644271 ~ 3645229 (+)
CI01000058_03503653_03506062 NA coding upstream 200536 3503378 ~ 3506296 (+)
CI01000058_03201861_03220295 TAF4A, TAF4 coding upstream 486108 3200982 ~ 3220724 (+)
CI01000058_03181624_03193630 SLC6A14 coding upstream 510908 3181420 ~ 3195924 (+)
CI01000058_03846867_03850723 SYNPR, NAMPTB coding downstream 136788 3846867 ~ 3850723 (+)
CI01000058_03889526_03896649 SYNPR coding downstream 179235 3889314 ~ 3896755 (+)
CI01000058_03915537_03946197 ATXN7 coding downstream 204843 3914922 ~ 3948073 (+)
CI01000058_03959155_03965275 SLC2A9L1 coding downstream 249076 3959155 ~ 3965598 (+)
CI01000058_04174884_04175951 RHOL coding downstream 464721 4174800 ~ 4176830 (+)
G249662 NA non-coding upstream 5760 3683476 ~ 3701072 (+)
G249660 NA non-coding upstream 26965 3679607 ~ 3679867 (+)
G249653 NA non-coding upstream 49556 3657077 ~ 3657276 (+)
G249649 NA non-coding upstream 69770 3636812 ~ 3637062 (+)
G249647 NA non-coding upstream 77876 3628653 ~ 3628956 (+)
G249669 NA non-coding downstream 11198 3721277 ~ 3732184 (+)
G249674 NA non-coding downstream 32581 3742660 ~ 3743084 (+)
G249675 NA non-coding downstream 33966 3744045 ~ 3752080 (+)
G249692 NA non-coding downstream 64544 3774623 ~ 3775311 (+)
G249767 NA non-coding downstream 293584 4003663 ~ 4003971 (+)
CI01000058_01794468_01800421 KISS1 other upstream 1909100 1794468 ~ 1800421 (+)
G247940 NA other upstream 2250385 1452997 ~ 1456447 (+)
CI01000058_01280337_01289153 DNASE2B other upstream 2418562 1278592 ~ 1289874 (+)
CI01000058_00592498_00596709 NA other upstream 3109661 592331 ~ 597171 (+)
CI01000058_00435196_00437830 AGTRAP other upstream 3251088 434913 ~ 455744 (+)
G250039 NA other downstream 984329 4694408 ~ 4697161 (+)
CI01000058_04864571_04888198 NA other downstream 1116297 4864571 ~ 4888216 (+)

Expression


Co-expression Network