G249981


Basic Information

Item Value
gene id G249981
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 4363707 ~ 4413637 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU283682
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTCACGTTTAAATAGAACTTTTATTTACAACAATATCAACATCAAGCAAAATAATTAAGTGTAATGTAATTTACATCCTGTAAAATGTGAGCTTATCTTCCATGTTCACACCTTTACGTCAACCAGTTCTGAAAACACACCAGAATAACCTCAATTTCCCGGAATTATCATTTCAAAATATACTTTGTCGCAATCAACAGTAATCTAGCGAAATGAACACAAATTATAGTGTTGCTTTCCTGAAGAGACTGACTGACTTATTAGTTTCCCCATTGTATTTCATTCCTGCACATGGGAATCAGCATTATTTGAAGTCACTGATGGTAAAGACTTGATTAATGAAGCGGCTGAGGATCACTGCAATACAGAGATGCACGGATGAGCGTCTTTGTCAGAATGGATTCCTTATTACTCGTACTTTTAAAAAGCACATCCGAGAGGCTCTTAAAAGTGGTTTAAGAAACGTTTTAAAATGAGGTGTGTAGTCACAATTTATCTTGGCAGTTCTGTAGATAATTCATAATTATTAAAATCTTACAAAACTTAAACTGAAGAGCGAACAAACCGCATGATAGAGAAACCCTCCAAAAGCACAGACAATACTGCTAAAATATTAACTGGCCTTAAAAATAAACAGGTATACTTGGTTTTGTATGTATACAGTATATAGTACAAAATCATAATATGTAGTAATATGTTCATATGATATGTACCTTTTACTCTGCGCATTTGCGCAAAAACATATATAAATGGATACATTTCTGTAATCAAACTTGAGAAAACAGAAAAAGAAAAAACTGAAAAAATATCTTTGGATTGTGCATGTTTCTTAAAGGTAGATTTCCGAAGAACCGACAGTACGATACAGTGAGAAAGTGAGTTATTTTCCTTAATAAGAGCTAGCTTAAAGAGCAACATCAAGCGTAATCTGAAAACTTGCACCATTTTTTTTTTTTCTGGTCAGAACGAAAAAAGGAAATGAAAATAAAATGATGAAACCGTCACTGCATAACATGTCTGCGATTAAAAAAAGTGCCATCCAAACATAATGGCGGTCATTGTTGGAAAAAAAGAAAAAGAGGCTGTGCTGGAACAGATAAAAATAAAATATTTTCTCCCTTTGATAAAAGTTAGAATAGATGTAAAACCCAGAGCAGTATTGACCTAAAATATAGATAAGATGGACCTAACCGGGCCCAAACTCTGTGCAAAAAAAGTATGTAGTAAAAGCATGTATGATACATATGTAGCATACAGTATTTACAATTCCAATCTTATTCACACAAAAATAAAAGAAAAAAATCCTGTCTAATACTGCAGTACCATTTGCTTTTTGTTGACACACCACTTCGGTGGATTGAGAGGAGGATTATTGCTTTGATATGCGTAAGTGATGAAGTTCTGGTGCTTACAATTCCCACGGTTTTTAATTAAAACAAGGCTTGTCCGAAACAAATTCAAAATAGACAATATGCACATAATCGTTCTATAAGGCTAGAAAAGCAAGAAATATATTGCAACTATCCTTTTCCGTACTAGCCTTAAAATAAAGTGCTCCCCACACTGTCAAGTTGTACCACAACCGTTCCTACTCTGTTCCCCCTGGTGGTTATGTTGTGTACTGCAGTACAGCCACGTGGGACAGGAGAGAGAGCCTGCTGCACTTGCTACTGGGCATACTCCGAAAAACCCCCACAGAGAAGGCTCGAGTCTCTCTCTTTCTCTCTTTTTCCCTTTCGATGTCTTTTTCTCTCTCTCAGTCAAGTTTTCACTGAAGAGTTCCAGTGATTTCTCCTCTACGAGGCGTATTTTATAGCTTCATGTTGACATTTCCTCACTGGACTGATGTGCGAGTCCGAGTTAGACTCCAGCTTTGACAGAGATGGCTCATCGCCTCAGCAGTACTTCTGTAAAACACATTATA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU283682 True 1953 lncRNA 0.36 2 4363707 4413637

Neighbor

gene id symbol gene type direction distance location
CI01000058_04344622_04358133 NA coding upstream 5574 4343021 ~ 4358133 (+)
CI01000058_04303891_04308850 NA coding upstream 54710 4303804 ~ 4308997 (+)
CI01000058_04272001_04275349 NA coding upstream 88276 4271906 ~ 4275431 (+)
CI01000058_04263520_04265153 NA coding upstream 98079 4263124 ~ 4265628 (+)
CI01000058_04174884_04175951 RHOL coding upstream 186877 4174800 ~ 4176830 (+)
CI01000058_04466648_04523385 ZMYND8 coding downstream 52559 4466196 ~ 4523483 (+)
CI01000058_04556260_04565696 FGD5A coding downstream 142520 4556157 ~ 4566008 (+)
CI01000058_04584028_04613429 FGD5A coding downstream 170391 4584028 ~ 4613747 (+)
CI01000058_04637318_04650366 PRKCDB, PRKCD, PRKCDA coding downstream 223581 4637218 ~ 4650506 (+)
CI01000058_04656762_04675421 SFMBT1 coding downstream 242679 4656316 ~ 4676097 (+)
G249970 NA non-coding upstream 22723 4340772 ~ 4340984 (+)
G249899 NA non-coding upstream 122812 4240237 ~ 4240895 (+)
G249886 NA non-coding upstream 144938 4217928 ~ 4218769 (+)
G249873 NA non-coding upstream 192615 4170590 ~ 4171092 (+)
G249869 NA non-coding upstream 209216 4154247 ~ 4154491 (+)
G249980 NA non-coding downstream 4288 4417925 ~ 4418264 (+)
G249979 NA non-coding downstream 6711 4420348 ~ 4420792 (+)
G250013 NA non-coding downstream 37890 4451527 ~ 4452571 (+)
G250035 NA non-coding downstream 128362 4541999 ~ 4542243 (+)
G250049 NA non-coding downstream 263276 4676913 ~ 4677151 (+)
CI01000058_01794468_01800421 KISS1 other upstream 2565975 1794468 ~ 1800421 (+)
G247940 NA other upstream 2907260 1452997 ~ 1456447 (+)
CI01000058_01280337_01289153 DNASE2B other upstream 3075437 1278592 ~ 1289874 (+)
CI01000058_00592498_00596709 NA other upstream 3766536 592331 ~ 597171 (+)
CI01000058_00435196_00437830 AGTRAP other upstream 3907963 434913 ~ 455744 (+)
G250039 NA other downstream 280771 4694408 ~ 4697161 (+)
CI01000058_04864571_04888198 NA other downstream 412739 4864571 ~ 4888216 (+)

Expression


Co-expression Network