G250039


Basic Information

Item Value
gene id G250039
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 4694408 ~ 4697161 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU283772
TTTCTGACACTGACTGCTGAGCTAATAATATATAATGATAAGAGAGAGGGGGGAGGGAGGCACGCTGAGCTGGTAACAAGGGTATAAAAGAGCCAGGACGAAAAGACAAAGTACACAACTTGTCCAGAAACCAGACCGCAACCATACAGAATGTCTCAGCCAGAGGTCAAGAAGAAGAAGCGGCCAGTTGTAAAAGAGGAGGATCTGAAAGGAGCCCGCAGTAAACTGGGGCTGAAAGGAGAGGTCAAGAGCAAGACATATGAGGTCATGGTTGAGTGTGAGCGCATGGGGAAGGTGGCGCCGTCTGTTTTCAGTGGAGTTCGGTCTGGAGGAGAGACGGTGCTTGAGAAACCCAAACCTCCAACAGGAAGCGTGTTTGGCAAATGATGAATCAAGTGCTGAATGGACAAATGCCCTGATAGCGCATAGATTTCGTTTTTAGCATCCACATCATGAATTAATCAACCATAATGTGGATATTTATGTTGCATATTTCCAACTAATAGTGTATGTTTTTATACTGTTTTATGTTGCTATATGTTTCTCTCAAATTGCAC
>TU283769
GGGAGGCACGCTGAGCTGGTAACAAGGGTATAAAAGAGCCAGGACGAAAAGACAAAGTACACAACTTGTCCAGAAACCAGACCGCAACCATACAGAATGTCTCAGCCAGAGGTCAAGAAGAAGAAGCGGCCAGTTGTAAAAGAGGAGGATCTGAAAGGAGCCCGCAGTAAACTGGGGCTGAAAGGAGAGGTCAAGAGCAAGACATATGAGGTCATGGTTGAGTGTGAGCGCATGGGGAAGGTGGCGCCGTCTGTTTTCAGTGGAGTTCGGTCTGGAGGAGAGACGGTGCTTGAGAAACCCAAACCTCCAACAGGAAGCGTGTTTGGCAAATGATGAATCAAGTGCTGAATGGACAAATGCCCTGATAGCGCATAGATTTCGTTTTTAGCATCCACATCATGAATTAATCAACCATAATGTGGATATTTATGTTGCATATTTCCAACTAATAGTGTATGTTTTTATACTGTTTTATGTTGCTATATGTTTCTCTCAAATTGCAC
>TU283770
GGGAGGCACGCTGAGCTGGTAACAAGGGTATAAAAGAGCCAGGACGAAAAGACAAAGTACACAACTTGTCCAGAAACCAGACCGCAACCATACAGAATGTCTCAGCCAGAGGTCAAGAAGAAGAAGCGGCCAGTTGTAAAAGAGGAGGATCTGAAAGGAGCCCGCAGTAAACTGGGGCTGAAAGGAGAGGTCAAGAGCAAGACATATGAGGTCATGGTTGAGTGTGAGCGCATGGGGAAGGTGGCGCCGTCTGTTTTCAGTGGAGTTCGGTCTGGAGGAGAGACGGTGCTTGAGAAACCCAAACCTCCAACAGGAAGCGTGTTTGGCAAATGATGAATCAAGTGCTGAATGGACAAATGCCCTGATAGCGCATAGATTTCGTTTTTAGCATCCACATCATGAATTAATCAACCATAATGTGGATATTTATGTTGCATATTTCCAACTAATAGTGTATGTTTTTATACTGTTTTATGTTGCTATATGTTTCTCTCAAATTGCACTTGAAAAATTGTATGTGCTAGTTTCTAGTATCATGTTTTCTATATAAAACATTTCTTAAATGTATCACTGAGTCGCCGAGTATGATTTCTCTGTCATGCCGTTTATGACCTGTCATTTCAAACTATGTGAGCAAATATTACATCACACAATAGTGGTTTAGTAAAAAAAAAAAAAAAGTGCTGCCTATGCAAATTTGGGGAAGGAGGATGGAGTACAAATGAAAATTGATGCTTATTAAAGGATTTAACCA
>TU283771
GGGAGGCACGCTGAGCTGGTAACAAGGGTATAAAAGAGCCAGGACGAAAAGACAAAGTACACAACTTGTCCAGAAACCAGACCGCAACCATACAGAATGTCTCAGCCAGAGGTCAAGAAGAAGAAGCGGCCAGTTGTAAAAGAGGAGGATCTGAAAGGAGCCCGCAGTAAACTGGGGCTGAAAGGAGAGGTCAAGAGCAAGACATATGAGGTCATGGTTGAGTGTGAGCGCATGGGGAAGGTGGCGCCGTCTGTTTTCAGTGGAGTTCGGTCTGGAGGAGAGACGGTGCTTGAGAAACCCAAACCTCCAACAGGAAGCGTGTTTGGCAAATGATGAATCAAGTGCTGAATGGACAAATGCCCTGATAGCGCATAGATTTCGTTTTTAGCATCCACATCATGAATTAATCAACCATAATGTGGATATTTATGTTGCATATTTCCAACTAATAGTGTATGTTTTTATACTGTTTTATGTTGCTATATGTTTCTCTCAAATTGCACTTGAAAAATTGTATGTGCTAGTTTCTAGTATCATGTTTTCTATATAAAACATTTCTTAAATGTATCACTGAGTCGCCGAGTATGATTTCTCTGTCATGCCGTTTATGACCTGTCATTTCAAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU283772 False 557 TUCP 0.44 3 4694408 4696910
TU283769 False 503 TUCP 0.45 3 4694462 4696910
TU283770 False 754 TUCP 0.41 3 4694462 4697161
TU283771 True 625 TUCP 0.42 3 4694462 4697032

Neighbor

gene id symbol gene type direction distance location
CI01000058_04678629_04687645 TMEM110 coding upstream 5913 4678102 ~ 4689520 (+)
CI01000058_04656762_04675421 SFMBT1 coding upstream 18311 4656316 ~ 4676097 (+)
CI01000058_04637318_04650366 PRKCDB, PRKCD, PRKCDA coding upstream 43902 4637218 ~ 4650506 (+)
CI01000058_04584028_04613429 FGD5A coding upstream 80661 4584028 ~ 4613747 (+)
CI01000058_04556260_04565696 FGD5A coding upstream 128400 4556157 ~ 4566008 (+)
CI01000058_04748480_04757498 QRICH1 coding downstream 51263 4748424 ~ 4757638 (+)
CI01000058_04769469_04774262 TWF2B, TWF2 coding downstream 72308 4769469 ~ 4774485 (+)
CI01000058_04777182_04780095 NA coding downstream 79381 4776542 ~ 4780376 (+)
CI01000058_04782847_04791049 UBA3 coding downstream 85686 4782847 ~ 4791555 (+)
CI01000058_04792565_04803181 TMF1 coding downstream 95404 4792565 ~ 4803404 (+)
G250049 NA non-coding upstream 17257 4676913 ~ 4677151 (+)
G250035 NA non-coding upstream 152165 4541999 ~ 4542243 (+)
G250013 NA non-coding upstream 241837 4451527 ~ 4452571 (+)
G249979 NA non-coding upstream 273616 4420348 ~ 4420792 (+)
G250075 NA non-coding downstream 30648 4727809 ~ 4738445 (+)
G250098 NA non-coding downstream 186844 4884005 ~ 4884279 (+)
G250095 NA non-coding downstream 187301 4884462 ~ 4885100 (+)
G250120 NA non-coding downstream 207779 4904940 ~ 4905140 (+)
G250124 NA non-coding downstream 221211 4918372 ~ 4918573 (+)
CI01000058_01794468_01800421 KISS1 other upstream 2896676 1794468 ~ 1800421 (+)
G247940 NA other upstream 3237961 1452997 ~ 1456447 (+)
CI01000058_01280337_01289153 DNASE2B other upstream 3406138 1278592 ~ 1289874 (+)
CI01000058_00592498_00596709 NA other upstream 4097237 592331 ~ 597171 (+)
CI01000058_00435196_00437830 AGTRAP other upstream 4238664 434913 ~ 455744 (+)
CI01000058_04864571_04888198 NA other downstream 129215 4864571 ~ 4888216 (+)

Expression


Co-expression Network