XLOC_010160 (tp53inp1)


Basic Information

Item Value
gene id XLOC_010160
gene name tp53inp1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 40560622 ~ 40569769 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020147
AATTTTCCACAACAATAACAAAGGGAGCAGTTGAGACCTCGGAGAAGAAACGAAAAAGAGCCGACTGCGAAACTCCGAACTAAAGGGTCCACAAACTTTGAATTTCTTCCGGGaagaattatatttatatatttttatatatcgcACGACAAATTATCTACCTCAACCAGTCGAAGTGATCTGTTTTTGTTCTTGAAGTCAGCCCTCTTCCTGTTTACATTACTTTTTGCCGCAGGGCCTGTTTCTGTTTTGCACTATCAACAAGAGGAAATGGCTGAACTTCAGGTGTTTCACAGTTGAGAAGGAGTAACTAATGCACTTCAGCACCTTTATCAAGAACTCAGTGAGCGGCTCCCGCAGCTGATGACCAAAGAGCCCGGCCCTCGCCCACTCCCAGCAGGACCGTCCTCCAGCCTCACGCCTCTGCACGGGACAGCAACATGTTCCAGAGGTTCACCAGCGTCTTGTTTGGAGACTCCCTGGAGGAGGGCAGTGGATGTCCTGCCGATCCAGACTTCAACGAGAAGGAGGAGGACGACGAGTGGATTCTGGTCGATTATCTAGCAAAGGCCTGCTCTGGTGCATGTGGAGATGATCTGGAGGTTTGCCATGATGACGTTGCTCCGCTTGACCCTCCCGTGCGCTGCTCCTCCTGCTCCTCTCTGGATTCGGTGGCAGACACTGATGCAGAGGACGGCAACTTCTTGCATCTGGAGGCCACGTGTGGGCTGGAGGAGAGCTGGTTCATCACTCCTCCACCGTGTTTCATGGCTGGAGGCAGAGCTCCGGTCCTGCTGGAGACAAGTCCTCTGGAGAACCTACTGATCGAGCACCCCAGCATGTCCGTGTACGCCGTTCACAGCCCTCGTCAGCGACCTGCCAAGGACAGCACCCGTGAGCCATCCATTTTAAGATCTGAAGTTCAGCGCCGGCCGAGTCACCCTTCTGGATGTTACGCAGCCGCTCTGGTCGCTGCTCATGCAGGGTTTCTGGAGCAGACCAAGAACGGCCGCTTGGCGCAGCGTATTCGGGACAACGTTGATCGGCAGCAGCTGTCTCGCAACGCCTTGCGCCGCCTCAATCTGCTGCGTGATGGCGGAGCTAGACAGGCTAAAGCCACCGGGGGCTACGTTCACCAGCCGGGACAGAGGCAGTTCAACTACTGAGACGGTCCCCACTGCACTCCCCGTCCCCTCCTGCACGCCGGCCCTCCACACTGGGAGATTAGTCTTTCGCCAGAAGGAACGGAGTCTTTAGAATCAATGCCATAGGTCACTTTAATTCACGGCAGGTTCCGCTCTTCCTGAATGTGTCTGCGTCATGTTTTTCCTGTATAAGCTCCATCTGTTCGGTCTTGCGTGTCATGAAGAGTTGAATAACCAAGTGTTTTGTTTGAGTGGGATTGTGCTCAGTGCTGAGCATGTGTAGGCAGCTTGACACTTTCGTTGCCTTTAATTGCGTTGCTTTTTATTTGAAAGCCATACTCTGTCCAATCACTTCATCAGCAGCACTTATCTTTTTAGGTTGGAACCTGCCTGTGATTCTATATAGATCAGTGCTTTCTTCCtctttattttctctctctct
>TCONS_00020148
GGCTGAACTTCAGGTGTTTCACAGTTGAGAAGGAGTAACTAATGCACTTCAGCACCTTTATCAAGAACTCAGTGAGCGGCTCCCGCAGCTGATGACCAAAGAGCCCGGCCCTCGCCCACTCCCAGCAGGACCGTCCTCCAGCCTCACGCCTCTGCACGGGACAGCAACATGTTCCAGAGGTTCACCAGCGTCTTGTTTGGAGACTCCCTGGAGGAGGGCAGTGGATGTCCTGCCGATCCAGACTTCAACGAGAAGGAGGAGGACGACGAGTGGATTCTGGTCGATTATCTAGCAAAGGCCTGCTCTGGTGCATGTGGAGATGATCTGGAGGTTTGCCATGATGACGTTGCTCCGCTTGACCCTCCCGTGCGCTGCTCCTCCTGCTCCTCTCTGGATTCGGTGGCAGACACTGATGCAGAGGACGGCAACTTCTTGCATCTGGAGGCCACGTGTGGGCTGGAGGAGAGCTGGTTCATCACTCCTCCACCGTGTTTCATGGCTGGAGGCAGAGCTCCGGTCCTGCTGGAGACAAGTCCTCTGGAGAACCTACTGATCGAGCACCCCAGCATGTCCGTGTACGCCGTTCACAGCCCTCGTCAGCGACCTGCCAAGGACAGCACCCGTGAGCCATCCATTTTAAGATCTGAAGTTCAGCGCCGGCCGAGTCACCCTTCTGGATGTTACGCAGCCGCTCTGGTCGCTGCTCATGCAGGGTTTCTGGAGCAGACCAAGAACGGCCGCTTGGCGCAGCGTATTCGGGACAACGTTGATCGGCAGCAGCTGTCTCGCAACGCCTTGCGCCGCCTCAATCTGCTGCGTGATGGCGGAGCTAGACAGGCTAAAGCCACCGGGGGCTACGTTCACCAGCCGGGACAGAGGCAGTTCAACTACTGAGACGGTCCCCACTGCACTCCCCGTCCCCTCCTGCACGCCGGCCCTCCACACTGGGAGATTAGTCTTTCGCCAGAAGGAACGGAGTCTTTAGAATCAATGCCATAGGTCACTTTAATTCACGGCAGGTTCCGCTCTTCCTGAATGTGTCTGCGTCATGTTTTTCCTGTATAAGCTCCATCTGTTCGGTCTTGCGTGTCATGAAGAGTTGAATAACCAAGTGTTTTGTTTGAGTGGGATTGTGCTCAGTGCTGAGCATGTGTAGGCAGCTTGACACTTTCGTTGCCTTTAATTGCGTTGCTTTTTATTTGAAAGCCATACTCTGTCCAATCACTTCATCAGCAGCACTTATCTTTTTAGGTTGGAACCTGCCTGTGATTCTATATAGATCAGTGCTTTCTTCCtctttattttctctctctct

Function

symbol description
tp53inp1 Predicted to be involved in autophagosome assembly and positive regulation of transcription, DNA-templated. Predicted to act upstream of or within negative regulation of cell population proliferation; regulation of autophagy; and regulation of transcription, DNA-templated. Predicted to be located in PML body and cytosol. Predicted to be active in autophagosome and nucleus. Is expressed in nervous system and neural tube. Orthologous to human TP53INP1 (tumor protein p53 inducible nuclear protein 1).

GO:

id name namespace
GO:0000045 autophagosome assembly biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0008285 negative regulation of cell population proliferation biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0010506 regulation of autophagy biological_process
GO:0005776 autophagosome cellular_component
GO:0005634 nucleus cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-031018-3 Predicted to be involved in autophagosome assembly and positive regulation of transcription, DNA-templated. Predicted to act upstream of or within negative regulation of cell population proliferation; regulation of autophagy; and regulation of transcription, DNA-templated. Predicted to be located in PML body and cytosol. Predicted to be active in autophagosome and nucleus. Is expressed in nervous system and neural tube. Orthologous to human TP53INP1 (tumor protein p53 inducible nuclear protein 1).

Ensembl:

ensembl_id ENSDARG00000028017

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020147 False 1587 mRNA 0.52 4 40560622 40569769
TCONS_00020148 True 1315 mRNA 0.55 3 40563533 40569769

Neighbor

gene id symbol gene type direction distance location
XLOC_010159 nagpa coding upstream 18641 40508882 ~ 40541981 (+)
XLOC_010158 BX072576.1 coding upstream 96196 40463365 ~ 40464426 (+)
XLOC_010157 BX072576.2 coding upstream 206544 40346447 ~ 40354078 (+)
XLOC_010156 mettl6 coding upstream 215250 40340222 ~ 40345372 (+)
XLOC_010155 BX470182.1 coding upstream 339702 40217043 ~ 40220920 (+)
XLOC_010161 ccne2 coding downstream 5973 40575742 ~ 40586793 (+)
XLOC_010162 NA coding downstream 303472 40873241 ~ 40893518 (+)
XLOC_010163 NA coding downstream 371968 40941737 ~ 40945757 (+)
XLOC_010164 gbp coding downstream 384712 40954481 ~ 40955839 (+)
XLOC_010165 dek coding downstream 445394 41015163 ~ 41030634 (+)
XLOC_010153 NA non-coding upstream 221595 40131464 ~ 40339027 (+)
XLOC_010154 BX470182.2 non-coding upstream 376763 40183743 ~ 40183859 (+)
XLOC_010152 NA non-coding upstream 445815 40082902 ~ 40114807 (+)
XLOC_010151 CT025588.3 non-coding upstream 478566 40075545 ~ 40082056 (+)
XLOC_010166 NA non-coding downstream 466878 41036647 ~ 41054652 (+)
XLOC_010168 NA non-coding downstream 559295 41129064 ~ 41129320 (+)
XLOC_010170 NA non-coding downstream 572890 41142659 ~ 41148163 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000016_00456765_00460615 TP53INP1 coding CI01000016 null 454828 ~ 461209 (-)