XLOC_010170


Basic Information

Item Value
gene id XLOC_010170
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 41142659 ~ 41148163 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021746
AAAACGgtaaactgatcaaacagacaaacCCAATCCTTGTCTTAAACAACATCACTGCTGAAGACTCTGGAAATTACTCTTGTTCTTTGAGGAAATTTACAAACACTTTATCTGGAGAAAAGTCTCTTCTGATTATTGTAGTGTCTTCAGTATCGCCTGTGTTCATCATCATTGCAGCTGTGATTCTTATAAGAAGAAGGAAAGCAGCAAAAGAAAGAGAAGAACCCATGGATTCTCTTTATGCCTCGCTACAAATaactGCTGAAACTCAAGCATCAGCAGTCTACTCAAGCATACAAGATATACTGAAGGAGTGACAAAAGGATGAAGTGCAGCTTAATATAGATACAGATGTCAATATTAAACACAAGAAGCGAGCAATTGATTGCTGCGGTCAATTTTTGTCAGTGACTGCATTTGTTATTTTCAGTCTGAGCTGTAGTTTTGAAGATGATGAGGAACATTTCATCATATGTCAGTTTTATCAATTGCAAATGTGAGTTTGAAAGTGATGTCAGACACAGAACATGtttcctttatttaatttaaataatgttgttCATCAGATGTGGATTTTAATGTAACAGATGTTAAACTGCATGTCAATAGCTTGTGAAAGACCTTTATGTGATATAATTGCTAATAGTTAATGTTTTATGCAGTTTTAATGGCAAtttattgaaaaagaaaaaaacaaagctaGTATTTTTGTACTTCCGTAGgatatgtatgtttgtatattgTAGTGCATAATGTTGATGGAAGCTTTGTAAATGTTAATAacctattttttaattaattgttaataaaCGTAATTTTGTG
>TCONS_00021745
AAAACGgtaaactgatcaaacagacaaacCCAATCCTTGTCTTAAACAACATCACTGCTGAAGACTCTGGAAATTACTCTTGTTCTTTGAGGAAATTTACAAACACTTTATCTGGAGAAAGTATGTAGAACTTAGAATATATTAACCTTTTCATTTTTATATCAGATTCGCTAAATGGCAGCTGTATTACATGCACACACGTTTTGTTGTCTTCAACAGATGAGTCTCTTCTGATTATTGTAGTGTCTTCAGTATCGCCTGTGTTCATCATCATTGCAGCTGTGATTCTTATAAGAAGAAGGAAAGCAGCAAAAGAAAGAGAAGAACCCATGGATTCTCTTTATGCCTCGCTACAAATaactGCTGAAACTCAAGCATCAGCAGTCTACTCAAGCATACAAGATATACTGAAGGAGTGACAAAAGGATGAAGTGCAGCTTAATATAGATACAGATGTCAATATTAAACACAAGAAGCGAGCAATTGATTGCTGCGGTCAATTTTTGTCAGTGACTGCATTTGTTATTTTCAGTCTGAGCTGTAGTTTTGAAGATGATGAGGAACATTTCATCATATGTCAGTTTTATCAATTGCAAATGTGAGTTTGAAAGTGATGTCAGACACAGAACATGtttcctttatttaatttaaataatgttgttCATCAGATGTGGATTTTAATGTAACAGATGTTAAACTGCATGTCAATAGCTTGTGAAAGACCTTTATGTGATATAATTGCTAATAGTTAATGTTTTATGCAGTTTTAATGGCAAtttattgaaaaagaaaaaaacaaagctaGTATTTTTGTACTTCCGTAGgatatgtatgtttgtatattgTAGTGCATAATGTTGATGGAAGCTTTGTAAATGTTAATAacctattttttaattaattgttaataaaCGTAATTTTGTG
>TCONS_00021747
AAAACGgtaaactgatcaaacagacaaacCCAATCCTTGTCTTAAACAACATCACTGCTGAAGACTCTGGAAATTACTCTTGTTCTTTGAGGAAATTTACAAACACTTTATCTGGAGAAATGTCTTCAGTATCGCCTGTGTTCATCATCATTGCAGCTGTGATTCTTATAAGAAGAAGGAAAGCAGCAAAAGAAAGAGAAGAACCCATGGATTCTCATTATGCCTCTTTACAAATaac

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0048739 cardiac muscle fiber development biological_process
GO:0048741 skeletal muscle fiber development biological_process
GO:0048747 muscle fiber development biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0006638 neutral lipid metabolic process biological_process
GO:0006639 acylglycerol metabolic process biological_process
GO:0006642 triglyceride mobilization biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:0042440 pigment metabolic process biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0036088 D-serine catabolic process biological_process
GO:1901565 organonitrogen compound catabolic process biological_process
GO:1901575 organic substance catabolic process biological_process
GO:0009078 pyruvate family amino acid metabolic process biological_process
GO:0009080 pyruvate family amino acid catabolic process biological_process
GO:0014904 myotube cell development biological_process
GO:0045214 sarcomere organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0044248 cellular catabolic process biological_process
GO:0046144 D-alanine family amino acid metabolic process biological_process
GO:0006522 alanine metabolic process biological_process
GO:0006524 alanine catabolic process biological_process
GO:0046436 D-alanine metabolic process biological_process
GO:0055130 D-alanine catabolic process biological_process
GO:0044872 lipoprotein localization biological_process
GO:0003013 circulatory system process biological_process
GO:0061061 muscle structure development biological_process
GO:0070178 D-serine metabolic process biological_process
GO:0042953 lipoprotein transport biological_process
GO:0005764 lysosome cellular_component
GO:0005773 vacuole cellular_component
GO:0000323 lytic vacuole cellular_component
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0005576 extracellular region cellular_component
GO:0032994 protein-lipid complex cellular_component
GO:1990777 lipoprotein particle cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0034358 plasma lipoprotein particle cellular_component
GO:0034359 mature chylomicron cellular_component
GO:0034361 very-low-density lipoprotein particle cellular_component
GO:0042627 chylomicron cellular_component
GO:0034362 low-density lipoprotein particle cellular_component
GO:0034385 triglyceride-rich plasma lipoprotein particle cellular_component
GO:0004175 endopeptidase activity molecular_function
GO:0004197 cysteine-type endopeptidase activity molecular_function
GO:0120013 lipid transfer activity molecular_function
GO:0120015 sterol transfer activity molecular_function
GO:0120020 cholesterol transfer activity molecular_function
GO:0070325 lipoprotein particle receptor binding molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function
GO:0050750 low-density lipoprotein particle receptor binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021746 False 822 lncRNA 0.33 4 41142659 41144116
TCONS_00021745 False 924 lncRNA 0.33 3 41142659 41144116
TCONS_00021747 True 238 lncRNA 0.37 3 41142659 41148163

Neighbor

gene id symbol gene type direction distance location
XLOC_010169 si:ch211-53m15.2 coding upstream 6520 41135018 ~ 41136139 (+)
XLOC_010168 NA coding upstream 13339 41129064 ~ 41129320 (+)
XLOC_010167 scap coding upstream 38877 41060161 ~ 41103782 (+)
XLOC_010166 NA coding upstream 88007 41036647 ~ 41054652 (+)
XLOC_010165 dek coding upstream 112025 41015163 ~ 41030634 (+)
XLOC_010171 sc:d156 coding downstream 14691 41162854 ~ 41169589 (+)
XLOC_010172 nek11 coding downstream 23786 41171949 ~ 41296829 (+)
XLOC_010173 BX005012.4 coding downstream 317348 41465511 ~ 41473318 (+)
XLOC_010174 si:dkey-11p23.7 coding downstream 369025 41517188 ~ 41521289 (+)
XLOC_010175 BX005012.2 coding downstream 398600 41546763 ~ 41548437 (+)
XLOC_010163 NA non-coding upstream 196902 40941737 ~ 40945757 (+)
XLOC_010162 NA non-coding upstream 249141 40873241 ~ 40893518 (+)
XLOC_010157 BX072576.2 non-coding upstream 788581 40346447 ~ 40354078 (+)
XLOC_010183 BX649388.2 non-coding downstream 918419 42066582 ~ 42073705 (+)
XLOC_010184 NA non-coding downstream 942143 42090306 ~ 42096260 (+)
XLOC_010186 NA non-coding downstream 1189082 42337245 ~ 42337549 (+)

Expression


Co-expression Network