XLOC_010171 (sc:d156)


Basic Information

Item Value
gene id XLOC_010171
gene name sc:d156
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 41162854 ~ 41169589 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020161
GAATAAAAACATCTTCTACGAGCTAAATAACTGAAACAGTGGATCAAAATGCTACAGTTTCTTCTTTTCCTCCTGCCCGGTGTTCTCAGTGATGAGTGGAATGTGAATTATCCTTCTCAGATCTGTGCTGCAAGAGGATCCAATGTCACTATTGCCTGCACATTTACATTTCCAGGAAATGACCCAGACGCAGTAAAGCAAGTGCTGTGGTGTTCAATGAACTCAAACTTTAACAAGTGTGAGTCTGGACCATATGTCTTTGACAGTGAAGCCAAGAATAATTCAGTTAGTTTTCAATACATTGGAAATAAAGCTTCAGATTGTTCTCTTTTGATTAATGATATTAAGCTCACAGAATCTAGAGAATATAAGTTCAGATTTATTACTAGTCTTCCAAATGGCAAGTGGACAGGTGATCCCGGAGTGAACATTTCAGTATCtgAGTTAAAAGTCTCCATGTCCAGGTCAAGAATTAATGGAAGCACAATAACTGGAGACTCTGTGAATTTGACTTGTTCACTGGACTGTCCTAATGATTTATCAGAGGTTCAGTGGTTTAAGAATGGTGAACTgatgaaacaaacaaacccaaTCCTCATCTTCAACAACATCACTGCTGAAGACTCTGGAAAATACTCTTGTTCTTTGACGAACTTTACAAACACTTTATCTGGAGGATTTAGCATGTACATTGAAGATGTTTCTGAGTTCTCAACTCTTCTGATTATTGTTGTGTCTTCAGTCTTGCTTGTGTTCACCATTATTGCAGCTGTGTTTCTTATAAGAAGCAAAGCAGAAACTCAAAAAAACCTAAAGGAAGTAGGAGAAGGAACCAGAGTTTCGGATGACAACATCTGTCAAGCAACTGAAGCAGTGGATGAATCAAAGGTAGATGAAGTGCTGTATACGTGTGTCACCGTTAAACCCAAAGAAATCGACGTTAAATCCCAAAAACAAATATCTGCCAACACAGAGGAGCAGAATGAATCCATTTACAGCGCAGTGAAGACTGCTTGATGTGataagagtgtgtgtgcatgtgtgcatgtgtgtgtgtgcgtgtgtgtgtgtgtgtaaaagaaatACAAACATGTCCTTCAAAGATAGGAAACCTGACATCATCAACACCTCTCTCAGTGTCAGTCTTGTTTTGCTATATTTGAAGCAACTAATAAAGAAGAAAAGTGACAATAGAAAGCAACGCATTCATGGAAACTTCCTAGCAAGACAgataaaaacttctttaaaaaacagAGGAAGCATATGActatgtatagttttttttttcttgtacaaacatacattaaattattatgaACATTG

Function

symbol description
sc:d156 Predicted to be located in membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-080303-5 Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000076539

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020161 True 1323 mRNA 0.38 7 41162854 41169589

Neighbor

gene id symbol gene type direction distance location
XLOC_010170 NA coding upstream 14691 41142659 ~ 41148163 (+)
XLOC_010169 si:ch211-53m15.2 coding upstream 26715 41135018 ~ 41136139 (+)
XLOC_010168 NA coding upstream 33534 41129064 ~ 41129320 (+)
XLOC_010167 scap coding upstream 59072 41060161 ~ 41103782 (+)
XLOC_010166 NA coding upstream 108202 41036647 ~ 41054652 (+)
XLOC_010172 nek11 coding downstream 2360 41171949 ~ 41296829 (+)
XLOC_010173 BX005012.4 coding downstream 295922 41465511 ~ 41473318 (+)
XLOC_010174 si:dkey-11p23.7 coding downstream 347599 41517188 ~ 41521289 (+)
XLOC_010175 BX005012.2 coding downstream 377174 41546763 ~ 41548437 (+)
XLOC_010176 aste1a coding downstream 401064 41570653 ~ 41579815 (+)
XLOC_010163 NA non-coding upstream 217097 40941737 ~ 40945757 (+)
XLOC_010162 NA non-coding upstream 269336 40873241 ~ 40893518 (+)
XLOC_010183 BX649388.2 non-coding downstream 896993 42066582 ~ 42073705 (+)
XLOC_010184 NA non-coding downstream 920717 42090306 ~ 42096260 (+)
XLOC_010186 NA non-coding downstream 1167656 42337245 ~ 42337549 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000027_04206424_04209369 NA misc CI01000027 null 4205610 ~ 4209445 (-)