XLOC_010184


Basic Information

Item Value
gene id XLOC_010184
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 42090306 ~ 42096260 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00022012
caacttatccagcatatgttttacacagcgaatgccctttcagctgcaacttgCACAGAAAACAACCCAATTTTCCCCAATCTCTGTTTAACGGGTGGACGGTATGCAAATGCCAGAAAATCACTGTACGCTTTGCTGCTGCCAAACCGGTGGAACAAAGAAAAACGGCCGTATGACATTGCACACCAAAATCTCAGTGGATGATGGGAGTGACTGGGAGGAAAAGCAGAGCTATCCATGGTCCTGTGCTGCCACTCGTTGGCCAAGAATATGCTGCAGCTATTACTTCCAATGCACACAGGCTGCCTGTTAGAGCAAATAACAGGTGCATCACTGCCAAACCTTGTCATGTGTTACATCGGGAAtggttttcagattttaaatataatttagagATATACAGCAGCATTTTCAAATGATAATTAAGCACAATTTTCCCTATAATGTGTCGAGACATTTGCATATTCCTGTCATTCACTAGAGTAGTTTACTAGAGTAATACTGCTACTTTTACAACAGCATACTGTAATAGACAGCTTGCTGCTTTTCACATATGATTGTACATTTGATTTGAGATTTAAGAAATGCattacatacagtgctcagcatatataaatacctcacagatctctctattaaattcatattttaaataggaagctatgcaaaattatatttatgcgtatacattagattagtcaacactgaagtcaaatctggagcttatctaacaaaataacttgcgataacggtccaaaaactagcacaatagtacatccaaatttatatgatagagaaaaatattaaatacaaatttaaagagaagaaaaatcaagagaagcaaacaaATCTGAACAATTTAGTTGATATTTtgcaggttgtaatttattttgcttgaatttatttgaaatctttcaatttctaaattcttatggtgactaaaatgttattttaataaatatatctgttgaataaatcagtttagttcaaatacaccaaaatatgtcacctataatcactgagaaatggaaattccttttttaaaatggggtgtactcaattatgctgaacactgtaactagtgtatattgtgaaataaaATGGATTCATGTGAACATGGAGTCAGAAAGAGATTTAAATGACAATAAGGATCCTGATAACACTTATATAACATATTTAATTGAGCTATTCTTGCTA

Function

GO:

id name namespace
GO:0034447 very-low-density lipoprotein particle clearance biological_process
GO:0006739 NADP metabolic process biological_process
GO:0044281 small molecule metabolic process biological_process
GO:0034381 plasma lipoprotein particle clearance biological_process
GO:0004197 cysteine-type endopeptidase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00022012 True 1197 lncRNA 0.34 2 42090306 42096260

Neighbor

gene id symbol gene type direction distance location
XLOC_010183 BX649388.2 coding upstream 16601 42066582 ~ 42073705 (+)
XLOC_010182 fli1b coding upstream 43425 42018041 ~ 42046881 (+)
XLOC_010181 si:ch211-225p5.8 coding upstream 106173 41974438 ~ 41984133 (+)
XLOC_010180 scn1ba coding upstream 192561 41873708 ~ 41897745 (+)
XLOC_010179 si:dkey-199f5.6 coding upstream 251233 41826584 ~ 41839073 (+)
XLOC_010185 CU104741.1 coding downstream 174239 42270499 ~ 42308680 (+)
XLOC_010186 NA coding downstream 240985 42337245 ~ 42337549 (+)
XLOC_010187 NA coding downstream 367749 42464009 ~ 42470156 (+)
XLOC_010188 pkdc coding downstream 375195 42471455 ~ 42472987 (+)
XLOC_010189 si:ch211-135n15.1 coding downstream 380895 42477155 ~ 42477952 (+)
XLOC_010175 BX005012.2 non-coding upstream 541869 41546763 ~ 41548437 (+)
XLOC_010173 BX005012.4 non-coding upstream 616988 41465511 ~ 41473318 (+)
XLOC_010170 NA non-coding upstream 942143 41142659 ~ 41148163 (+)
XLOC_010168 NA non-coding upstream 960986 41129064 ~ 41129320 (+)
XLOC_010191 NA non-coding downstream 424446 42520706 ~ 42521936 (+)
XLOC_010193 NA non-coding downstream 594799 42691059 ~ 42693663 (+)
XLOC_010194 NA non-coding downstream 676408 42772668 ~ 42781775 (+)

Expression


Co-expression Network