XLOC_010188 (pkdc)


Basic Information

Item Value
gene id XLOC_010188
gene name pkdc
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 42471455 ~ 42472987 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020187
CAGAATGCACTGGATGCATCCCGGAAGTTCAACCTGTACTCATATCGTCCACGTTTCGCTTCAAGATTTTGAAGAATGAAGAAGGAACACCAGGATCTTGTTTTGAAGGAATGTGGAGCAAAGTCTCTGCAGATTGGTGCAAAGATTCAGACTCTGTGGAGCGGTTATGGTGAAATAATAAGAGTCCATCTGGAGGGATGTGACCGTCCCTCTGTGGTTGTCAAACATGTGATGTTTCCTCAAAACCAGAAGCATCCAGGAGGCTGGAACACAGACATTTCTCACCAGCGCAAAGTGCGATCTTATCAGGTAGAAACCTATTGGTACCAAAACTACACTACCAATGAAAACTGCCGAGTTCCTCTTTGTCTCGCTGCCAAGTCATTTGGTGAAGAGCAGTTGATTGTTTTGGAGGATCTCGATGTTGCAGGATTCCCAGTGAGAAAAACCTATGTTAATGATGCCGAAATCAAAGCCTGCCTGAGTTGGATTGCCAACTTTCATGCCCTTTTTCTTGATGTCACCCCGGAAGGACTTTGGCCTATAGGCACATACTGGCATTTAGAAACAAGGCCTGAAGAACTAGAAGCCATGTCAGACCAAAAACTCAAAGCAGCCGCTGGAGAGATCGACAGCATCCTCAACAACTGCCGCTTTAAGACAATTGTGCATGGTGATGCAAAGCTAGCTAATTTCTGCTTCTCCAAGGACGGTTTACAGGTTGCATCTGTTGATTTTCAGTATGTAGGTGGAGGGTGTGGGATGAAGGATGTGATTTACTTTTTGGGCAGCTGTATGGATGAACGAGAGTGTGAAAAGAAAGCGCCTGGCCTTTTGGATTACTATTTTTCAGAGTTGCGGAAATCTCTGGAGAAGAAGGTTGATTTTGCAGAGCTGGAGAAAGAATGGCGAAACATGTTCGCTTTCGCTTGGACTGACTTTCACCGCTTTCTTCTTGGGTGGATGCCAGGACATCACAAGATTAATAAGTATAGCAAAAGACTTACACAAGaagttttaaagaaattaaagcaatctCTTTGAATGTGTGGGGAAAATATGGTGTGGGatttacaataaaatttaaaCTTGTAAGTGAAAGTGTAATTGAACATTGAGACTGTACCAAATAAGatggtgtttattttatttcagaattgATGTATTTGTGGATGTGAACAACTTTTCGTGAGATTAAAATTGtaatcttatttatt

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041111-115 No description available

Ensembl:

ensembl_id ENSDARG00000103484

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020187 True 1217 mRNA 0.42 2 42471455 42472987

Neighbor

gene id symbol gene type direction distance location
XLOC_010187 NA coding upstream 1299 42464009 ~ 42470156 (+)
XLOC_010186 NA coding upstream 133906 42337245 ~ 42337549 (+)
XLOC_010185 CU104741.1 coding upstream 162775 42270499 ~ 42308680 (+)
XLOC_010184 NA coding upstream 375195 42090306 ~ 42096260 (+)
XLOC_010183 BX649388.2 coding upstream 397750 42066582 ~ 42073705 (+)
XLOC_010189 si:ch211-135n15.1 coding downstream 4168 42477155 ~ 42477952 (+)
XLOC_010190 herpud2 coding downstream 8460 42481447 ~ 42495383 (+)
XLOC_010191 NA coding downstream 47719 42520706 ~ 42521936 (+)
XLOC_010192 dpy19l1l coding downstream 194573 42667560 ~ 42683501 (+)
XLOC_010193 NA coding downstream 218072 42691059 ~ 42693663 (+)
XLOC_010175 BX005012.2 non-coding upstream 923018 41546763 ~ 41548437 (+)
XLOC_010194 NA non-coding downstream 299681 42772668 ~ 42781775 (+)
XLOC_010195 NA non-coding downstream 322617 42795604 ~ 42800731 (+)
XLOC_010197 CR854827.2 non-coding downstream 403459 42876446 ~ 42878011 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G138918 NA non-coding CI01000027 null 3492432 ~ 3497919 (+)