XLOC_010192 (dpy19l1l)


Basic Information

Item Value
gene id XLOC_010192
gene name dpy19l1l
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 42667560 ~ 42683501 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020191
AGATCAGCGGTGAAACTGAGCAGAGCCACAGATGAGAGGCGTCTGCGAGAGCCAAACTACTGATTTAACGCTCATCCGCGCCCCTGCTGCCGTCCTGCTACACAGAAATATGAAAACATGGTAGTAAAAACCAGAAAACCAAGTGCCAAGGAGCAGAGCAGCGAGAAAGACAGGAGTCAATCCGTGTCGGGGAAATGCAGGCGCGGAAAAGATGGGAAAGGCTCGGCTTTTCAGAGTAAAAACGGACTCTTTGCTGGGTTTATTAGAAACAGACTGGGTTTGAGCCCCTCCGCTTTTGTAAGAGGAATAACAGTGCTGATTCTCGCTGTTGTTGCAGGTTTTTTTCATTGGTATCATCTCTCACATCTGTTTGAAAATGACAGACATTTTTCACACATGTCTACTTTAGAGAAGGAAATGGCTTTTCGAACAGAGATGgGACTGTATTACTCATATTTCAAGACAATCATCGAGGCTCCGTCCTTTATGGATGGTCTTTACATGATCATGAATGACCGTCTTACTGAATATCCGCTGGTCATCAACACCCTAAAGAGGTTCAACTTGTACCCTGAGGTGGTCTTGGCCAGCTGGTACAGAGCATACAGCAGCACAATGAACTTCTTTGGGTTCCCCACCAAGTTATGTTGGACCATCAACAGAGGAGAGGGTCTGGATCCAGTGGAGAGTTGTGAAGGTCTGGGAGATCCTGCATACTTCTATGTCGCTTTTGTGTTCCTGTTAAATGGGGCTATGATGAGCCTATTCTTCATTTATGGAACATATCTGAGTGGAAGTCGATTGGGCGGCACTGTGACAGTTCTGTGTTTCTTCTTTAACCACGGAGAGAGCACTCGGGTCATGTGGACGCCACCTTTAAGAGAGAGCTTCTCTTACCCCTTTCTGGTTCTTCAGATGCTTCTGCTCACATACATCCTTCGGACAAAGAACCCAAGTAAGAATACCATGATGGCTCTGGGGATCTCCAATGTTTTCTTTATGTTGCCCTGGCAGTTTGCTCAGTTTGTCTTACTTACTCAGGTTGCTTCCCTTTTTGCTTCATATATCCTGGGATATCTGAGTCCAGCAAAAATGCAGTCCATTTTAGTGACACACATGGTCTCCCTGGCTGTCTGCTTTCTTCTGATGTTCGGGAACTCGATGCTTCTGACGTCTTTCTACGCCTCTTCGTTGGTATCCATTTGGGGGGTTATTGCACTCAGGGACCGTCTGGTTGGTACATTCAGACCTGGCCTCATCACGTGGGTCACGCAGTGCTTTGCATGGGTGGTTTCCACTGTTATTCTGAAGTTCATGCTGTCTGTGATCTTTGGAGCGTCAGATGATgCCCACATTAGCAGTCTGATCAAATCCAAGTTCACAAGCTACAAAGACTTCGACACGATGATGTACACATGTGCGGCCGAATTTGACTTCATCGAAGCAGATACTCCTATCCGGTACATCAAGACCATGCTGCTTCCAATTAATGTGCTGATAGTGGCTTTTATTGCTGGAAGGACCATACAGGACGTCATTGTGTTCCTCAGAAATGAGAAGCAAGAAAAGTCAGAGGATGATGAAACGGAGCAGTCCCATCTTTTGGCGAAGGGAGTGCTGGTTTACCACAGTCTGCAGCTGGTGGCGTTTGCAGTGTTGGCTGTGCTCATCATGAGACTGAAGCTCTTCCTCACTCCTCACATGTGCATCATGTCCTGCTTGATCTGCTCCAGACAGCTGTTTGGCTGGATTGGTGAGAAGCTCAAACTCCAGATGACTGTCGTGGGAATATTGTGCATCATGGCAGCGCAAGGAGTGGTGAATCTGCAGAGTCAATGGAGCATCATTGGAGAATTCAGCAACTACCCTCAAGAAGAGCTCCTGGAGTGGATCAAGGACAGCACCAGCCCTACTGCTGTGTTTGCTGGCGCGATGCCCACTATGGCGAGTGTGAAACTGTCCACAGGGAGAGCCATAGTGAATCACCCACACTATGAAGATGCAGGATTGAGAGCGAGAACAAAGATGGTGTACGCCATGTACAGTCGAAAGCCTGCTGAAGAAGTTAAGCGAAACTTAATAAAGCTGCAGGCCGACTATTTCATCTTGGAGGACTCGTGGTGCACCAGACGCTCCAAGCCAGGCTGCAGTATGCCTGAGATCTGGGACGTGGAGGATGCAGAAAACGCTGGAAAAGTGCCGCTCTGCACACTCATGTCAAGGGATTCTCGTCCTCACTTCTCCACAGTCTTTCACAACAACATTTACAAAGTGCTTCGAGTTCCCAAAACAGCGAGAGACGTGAGATAACAGCAGTTTGCCTCCGCTTTTCTTTATAG

Function

symbol description
dpy19l1l Predicted to enable mannosyltransferase activity. Predicted to be involved in protein C-linked glycosylation via 2'-alpha-mannosyl-L-tryptophan. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in nuclear inner membrane. Is expressed in floor plate. Human ortholog(s) of this gene implicated in spermatogenic failure 9. Orthologous to several human genes including DPY19L1 (dpy-19 like C-mannosyltransferase 1).

GO:

id name namespace
GO:0018406 protein C-linked glycosylation via 2'-alpha-mannosyl-L-tryptophan biological_process
GO:0005637 nuclear inner membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0000030 mannosyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030521-11 Predicted to enable mannosyltransferase activity. Predicted to be involved in protein C-linked glycosylation via 2'-alpha-mannosyl-L-tryptophan. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in nuclear inner membrane. Is expressed in floor plate. Human ortholog(s) of this gene implicated in spermatogenic failure 9. Orthologous to several human genes including DPY19L1 (dpy-19 like C-mannosyltransferase 1).

Ensembl:

ensembl_id ENSDARG00000069995

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020191 True 2339 mRNA 0.48 22 42667560 42683501

Neighbor

gene id symbol gene type direction distance location
XLOC_010191 NA coding upstream 145624 42520706 ~ 42521936 (+)
XLOC_010190 herpud2 coding upstream 172177 42481447 ~ 42495383 (+)
XLOC_010189 si:ch211-135n15.1 coding upstream 189608 42477155 ~ 42477952 (+)
XLOC_010188 pkdc coding upstream 194573 42471455 ~ 42472987 (+)
XLOC_010187 NA coding upstream 197404 42464009 ~ 42470156 (+)
XLOC_010193 NA coding downstream 7558 42691059 ~ 42693663 (+)
XLOC_010194 NA coding downstream 89167 42772668 ~ 42781775 (+)
XLOC_010195 NA coding downstream 112103 42795604 ~ 42800731 (+)
XLOC_010196 polr3glb coding downstream 146234 42829735 ~ 42843397 (+)
XLOC_010197 CR854827.2 coding downstream 192945 42876446 ~ 42878011 (+)
XLOC_010186 NA non-coding upstream 330011 42337245 ~ 42337549 (+)
XLOC_010184 NA non-coding upstream 571300 42090306 ~ 42096260 (+)
XLOC_010183 BX649388.2 non-coding upstream 593855 42066582 ~ 42073705 (+)
XLOC_010198 NA non-coding downstream 214081 42897582 ~ 42901740 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000027_03371533_03388330 DPY19L1L coding CI01000027 null 3371249 ~ 3389135 (-)