XLOC_010193


Basic Information

Item Value
gene id XLOC_010193
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 42691059 ~ 42693663 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00022015
gttatcatttaattgaatgggcattatcagctgatagatatgggcttaTAGGGGCCTTCTGCGCATACTGCAcagaaaaaatgatgtctgcaaaattgttgcaaacaatttatatgttgaatttaaacaaacaaattaaatttagtaatgttcaacttaatttgtttacttaaactcagcacaaataaattatttacacttACCTTAACAAAAATTAGGTAAAtacaaggaatcatctttgataCATATTTTTTAGGTAACCATGCTATTAACgttcatccacatggttaatcagctatactgtACTAATAAGAagactctgtcctggagggccggtgtcctgcatgcttttgctgcaacactaatcaaacacacctgaacatgctaatcagtgtcttgaagatcactagaaatctatatgcaggtgtgtgtgattagagttggagctaaactgtgcaggacgccggccctccaggaccgagtttgccagCCCCTGAGTTAAGTCATAATTGTAACGTTTTATCTCATAATATTTACATATGTCATCATTTCAACGAGGTAAAAGTTACAATTATGACTACTTGAAATGATGACCAATGTTGAAATTATAAGTCGTATTTGTAACATTCTATCTCATAATTTCAACAAGTCCTAATTTTGAGTTAAGTCATAATTGGAagtcagatctgtttttacattactgtgatgattgggtttaagGTTGAGGTAGGggtacacattaataaaatattattaatggtaaatttaataaataatatgaataattctcaGCTGCAGCCGGATGTGATCTATAGCCGTTTAACCATGTGGAAgtatgataacagccttctgagccaaaCAGTAtacgcagaaggcccctactgacacatatctatcagctgataatgcccgttcaatcaagtgataacattcgaatcagcAGAGACATCCAGAGCAACAGGCGTTACTTTGTTTTGtctgcatgttgttttttttcatctCAAAATATTAGAAGCATTTAGTAAATCGCCATATTTCATCTAACATCAGCTCtactgaagaaaaagaaaatcatctCTATCTCAGACTGCTTGAAGGAAAGTAAATGAACAGCAGATTGCATTTCTGAGTGAACTAACTTTTAGACAATTCACAGCAAGTTTGAATTTTTCTGACCTCAATTTATTTGCAGGAATTGATTCAACAGACGTCCATTTGTTCTCATTCTGATCTCatatattataattacataaatCATCAATAATCTTTTAGACcatcaatttattatttgtttttttaaagttaaaaaaaaggacattaattatatttttgtacattCAGTTATATTTTTGACGTGACATTTTAAAGTGTGCTTTTtacacctttctttctttcttgtcatAACATTTGACGTTTTTctaatttgtgcatttacatattttaaaaaaatcagcaCTCTGCAACAAACAACATGTCTAAATGTACTGAAAAAGAACATCTAAAGTGATGATTTGATAACCGGTACCGTTATAAACAGTGTTTGCGTGTAAAACTAACTCTAAAAGACTTTGTCTTCAAATCTATGTTGagaaaattaaataagaaaataaaaataaacagtctGGGTGGCTCACAGCACCCTATACCTCTCAAATCATGGTGCGCTTttcatattaaaaacaaacttgtaGAAAATAAAAAGAGCTTGTTGGTTGTGGTTTAAAAGAGAAACTGGGATAAATACACCTGGAAGTCATTTGGCTTCTCTACCTTTGGCTTGACTCACAGATGAGCAGCAGCAGAGCTCAGACTAGAGGGTTCTGGGAAGGACCACAGTGAGTCTCATAGAGATGTCTCTGTATCCACACGCTTGTCCTCTTCATCCTCGTCTTCCACACGGATCTTAATGCAGGCCGTCTTCTCCTCACTGTAAAACAAAGGACAGCTGAAGGCCAGATTCACTCACAGCTTTTCAAGTCTGCCTTTTTCTAAAAGGTATTAGCAACATTTAATGACATCACACATCAGAAATGTGCATAAGCAGATCCAGCACACCCATTTCACAAGCATCATAAACACCAGGAGACAAGTGCATCGAAACGACACGTAAAAAGCTTAAATGTTTTGGTGTTTTTTATGCAATACAGTATTCCCTCGCTATAGTGCGGTTCACCTGATTCAAGTGTTGCTGATTTTTTTTGGTGCAATCTGacatgtttttttaacagcacattacgttctgcatcctgattggctgta

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00022015 True 2259 lncRNA 0.35 2 42691059 42693663

Neighbor

gene id symbol gene type direction distance location
XLOC_010192 dpy19l1l coding upstream 7558 42667560 ~ 42683501 (+)
XLOC_010191 NA coding upstream 169123 42520706 ~ 42521936 (+)
XLOC_010190 herpud2 coding upstream 195676 42481447 ~ 42495383 (+)
XLOC_010189 si:ch211-135n15.1 coding upstream 213107 42477155 ~ 42477952 (+)
XLOC_010188 pkdc coding upstream 218072 42471455 ~ 42472987 (+)
XLOC_010194 NA coding downstream 79005 42772668 ~ 42781775 (+)
XLOC_010195 NA coding downstream 101941 42795604 ~ 42800731 (+)
XLOC_010196 polr3glb coding downstream 136072 42829735 ~ 42843397 (+)
XLOC_010197 CR854827.2 coding downstream 182783 42876446 ~ 42878011 (+)
XLOC_010198 NA coding downstream 203919 42897582 ~ 42901740 (+)
XLOC_010187 NA non-coding upstream 220903 42464009 ~ 42470156 (+)
XLOC_010186 NA non-coding upstream 353510 42337245 ~ 42337549 (+)
XLOC_010184 NA non-coding upstream 594799 42090306 ~ 42096260 (+)
XLOC_010183 BX649388.2 non-coding upstream 617354 42066582 ~ 42073705 (+)
XLOC_010199 NA non-coding downstream 347842 43041505 ~ 43048279 (+)

Expression


Co-expression Network