XLOC_010196 (polr3glb)


Basic Information

Item Value
gene id XLOC_010196
gene name polr3glb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 42829735 ~ 42843397 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020196
AGCGGGCAAAAACAAACGGGCAGATGTTTGGCGGGTGATTTTATTGCTCAATTTTACATCAATAAAACctgaaattacattaaaaacaaccaCGTTTACTGACGGATTAACCAATAAAACCTTTGCACAATGAAACGAAGTTGAAAATAAAGAGGGATTTCGCCGCATTGAGTGAAAGAGATGATGGCAGGAAGGGGCAGAGGGCAGCTCACTTTCTCTGTGGAGATAGTTGGGATCGGTAAAGGTGAAAATCTCCCTCCGTCCTGCATCCAGCCGACACCTCTGTTCCCCCCTCTGGATCAGAAGCCAGTGCCCCTGCAGGCAGGTGAGGAGGCCGAGTACATGCTGGCCCTCAAACAGGAGTTTAGGGGAGCCATGAAGACGCTCCCGTTTTACATCCGTCCAGCGGCTCCCAAGAAAGatGTGGAGCGTTATTCTGACAAATACCAAAAAAACGAAAGCTTTGACAATAGTTTGGAGTGGAAGCCAGactGGAGGCGTTTGCCGAAGGAGCTGCGTGTGAGAGAGAAGAGACCCCAGAGagacaAAAGCCAAGCTGTTCCCAAACGAGCCAAACAAGCACGAGTGGACAAAGAGGAGATCATACGCAAACTGGAGACTCTGGAGCAGAAAGAGAAAGAGGGGAGTTCGGATGAAGAGGAGGGAGAGAAGAAGAAGCCAGAAGAGGAAGAGGCCGAGGCAGAGAATGAGTACGATGAAGAGGAATTTGAGGATGAAACGGATTACATCATGTCCTACTTTGAAAACGGAGAGGAGTTTGGTGGAGACAGCGATGAAAACATGGATGAAGCCATTTACTGAAGCAGACGCCGGTTCTCCCGGAAGAGTTCTGTCCCTCAGGAGGACTCCAGGCTGGATCATTGTGTTTGGCAGCTGATGTTGAATCTGTATGCAGCAGATTTCCTCTCATCCGATCGGCTTGATTTGCTGAATCCAAAAGCCACGGCTGGAGGACACAGAGAAAGGCATAAACTTCTCTATTAATGCAGCTATTCATTCCCAGagctttttaaatgataaatagtgCACAACAAAAACCTTTTATTTAGGatgttataaatgtgttttagCTCGAGTTTTAGATTTAGCTAACGTTGTATTTGCTGTATAGATTTTATACTTTGTATCTTAGATTTATGAGCACATGTAgactgtttatttttctcaagtcaagtggttgtaaatatttttgttatcgTGGTTTTATGTAATAAAGTCACACATTCAA
>TCONS_00020197
ATGGCAGGAAGGGGCAGAGGGCAGCTCACTTTCTCTGTGGAGATAGTTGGGATCGGTAAAGGTGAAAATCTCCCTCCGTCCTGCATCCAGCCGACACCTCTGTTCCCCCCTCTGGATCAGAAGCCAGTGCCCCTGCAGGCAGGTGAGGAGGCCGAGTACATGCTGGCCCTCAAACAGGAGTTTAGGGGAGCCATGAAGACGCTCCCGTTTTACATCCGTCCAGCGGCTCCCAAGAAAGatGTGGAGCGTTATTCTGACAAATACCAAAAAAACGAAAGCTTTGACAATAGTTTGGAGTGGAAGCCAGactGGAGGCGTTTGCCGAAGGAGCTGCGTGTGAGAGAGAAGAGACCCCAGAGagacaAAAGCCAAGCTGTTCCCAAACGAGCCAAACAAGCACGAGTGGACAAAGAGGAGATCATACGCAAACTGGAGACTCTGGAGCAGAAAGAGAAAGAGGGGAGTTCGGATGAAGAGGAGGGAGAGAAGAAGAAGCCAGAAGAGGAAGAGGCCGAGGCAGAGAATGAGTACGATGAAGAGGAATTTGAGGATGAAACGGATTACATCATGTCCTACTTTGAAAACGGAGAGGAGTTTGGTGGAGACAGCGATGAAAACATGGATGAAGCCATTTACTGA

Function

symbol description
polr3glb Predicted to act upstream of or within transcription by RNA polymerase III. Predicted to be located in nucleus. Predicted to be part of RNA polymerase III complex. Orthologous to human POLR3GL (RNA polymerase III subunit GL).

GO:

id name namespace
GO:0006383 transcription by RNA polymerase III biological_process
GO:0005666 RNA polymerase III complex cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-041010-32 Predicted to act upstream of or within transcription by RNA polymerase III. Predicted to be located in nucleus. Predicted to be part of RNA polymerase III complex. Orthologous to human POLR3GL (RNA polymerase III subunit GL).

Ensembl:

ensembl_id ENSDARG00000013734

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020196 False 1249 mRNA 0.45 8 42829735 42843397
TCONS_00020197 True 639 mRNA 0.51 7 42830152 42842970

Neighbor

gene id symbol gene type direction distance location
XLOC_010195 NA coding upstream 29004 42795604 ~ 42800731 (+)
XLOC_010194 NA coding upstream 47960 42772668 ~ 42781775 (+)
XLOC_010193 NA coding upstream 136072 42691059 ~ 42693663 (+)
XLOC_010192 dpy19l1l coding upstream 146234 42667560 ~ 42683501 (+)
XLOC_010191 NA coding upstream 307799 42520706 ~ 42521936 (+)
XLOC_010197 CR854827.2 coding downstream 33049 42876446 ~ 42878011 (+)
XLOC_010198 NA coding downstream 54185 42897582 ~ 42901740 (+)
XLOC_010199 NA coding downstream 198108 43041505 ~ 43048279 (+)
XLOC_010200 rundc3b coding downstream 234512 43077909 ~ 43118095 (+)
XLOC_010201 NA coding downstream 275653 43119050 ~ 43124236 (+)
XLOC_010187 NA non-coding upstream 359579 42464009 ~ 42470156 (+)
XLOC_010208 NA non-coding downstream 843756 43687153 ~ 43687568 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000027_03261114_03264008 POLR3GLB, POLR3GL coding CI01000027 null 3261114 ~ 3264008 (-)