XLOC_010198


Basic Information

Item Value
gene id XLOC_010198
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 42897582 ~ 42901740 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020199
GCGGGGCGCTGCGGGGCCGCAGGTCCTTTTGTGCCCTTCACATTTTGGGCAAAATCAGAACCAGAGAGCTGCAGACGCGCCAAAAGCATGAAACCGGACTATACAAAAATAGTTTAGCTACAAACTTCACGCACAGCGACGTCCAGTACCGTGAAAGCGCGCCGAGAAACTGCAGTCTCCACGATGGATTGACAGACGCTGGTCAGTCTGGTTGTTTGGCCCGCACACAGACGGACTCCACACTGGTTTTAGGAAATGTAGAGAGACGGAGGGCGACTGGAGTTCTTCACACCTTTATGTGCATCAGAACCTGCTTACGGTGTGAACTGAAGTCCTCTGGAACGGTATCTGGAAAACATTTGGTTTGTCAGTGTGTTGTTTTATGCTCGTAGTGCTGTTCTTTTGTCAATAAACAACTGAATATGAGATTTGGTTTAGTGTTGTGTTTGAGGGGCTGGGATTGTTATTATAATTGGCAAAGATCGGATGACTTGTTACCGTTGCAGCGGTAGCGCAGATTGGACCAAATGATGTTCTCCTGAGAGAAGCAGAAGACGCCCAGACGACCTCCTCTCATAGAGGTGTCGATTACCACATCTGAGTCTGCCACCATCTCTGAGCCCTCATACAGCTTCAccctgcgcgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagttctctttatttatatgAAGTACATATGAATAGTGAATAGTTTAAATCTagcattttattaaatgtatactgTGTAGACGCATATTAAATATTAGAATAATGTAATGCttgtataatgttttaatttaacacattaaaatatttaaaggggtggtccactatggtATCAtattttagttgatgtgtaatgtagctgtatgaacataaacaacatctctaaatgtaagacggtcaaagttcaatgcaaagggagacattggcttttacacttagcaaagcctacagcgaacaaactttggggactacaaaaaaaatacttccgggttaatgatgtcataaactcTTCAGGTTACATACATACACCCTGCGCAGTGAAGGAGCATGTCCAGAAGCACTGTAATGTTTTAACAGAGATGCGGCTTGGTGATGTGGAGCTGATCTGTCAATCACagaacattatgttagctgaccaatcagagcctctagAGGGCGGGTCTTCGGAGCAACTAGGAAATATCCTTTTCATGTTAGGTGAgcagctgtatataatcaaagtaggatacataaaaaaaaaataacaacatgacTTTCTActaatgaagcatgagcacattgctttgcaccctgtaaacacaaccaagccttaaaaatacactctggaccacctctttaacaTTAGTTTAATAGTCCATTTTatacatacacagacagacacacacttatatagtgttataatgtacagtataattaATTATAACACATTCTACATGTATA
>TCONS_00022017
GCAAAATCAGAACCAGAGAGCTGCAGACGCGCCAAAAGCATGAAACCGGACTATACAAAAATAGTTTAGCTACAAACTTCACGCACAGCGACGTCCAGTACCGTGAAAGCGCGCCGAGAAACTGCAGGGAGGTGTGGGATGTTGTGCAGTGTTGTTCAATCTCCCGCCAATATTGCACTCGTCCCGGCCTCCCTGACCACGAGGAACACGCGACTCCCTGCTGTAATCTCCCGCCACAACAACCGCCGAACATATCGACCGCGAGGGCGGCGCCACACAGCAGGTGTTTGAGGTGTTTGATCCACAACACTTCTCCACGATGGATTGACAGACGCTGGTCAGTCTGGTTGTTTGGCCCGCACACAGACGGACTCCACACTGGTTTTAGGAAATGTAGAGAGACGGAGGGCGACTGGAGTTCTTCACACCTTTATGTGCATCAGAACCTGCTTACGGTGTGAACTGAAGTCCTCTGGAACGGTATCTGGAAAACATTTGGTTTGTCAGTGTGTTGTTTTATGCTCGTAGTGCTGTTCTTTTGTCAATAAACAACTGAATATGAGATTTGGTTTAGTGTTGTGTTTGAGGGGCTGGGATTGTTATTATAATTGGCAAAGATCGGATGACTTGTTACCGTTGCAGCGGTAGCGCAGATTGGACCAAATGATGTTCTCCTGAGAGAAGCAGAAGACGCCCAGACGACCTCCTCTCATAGAGGTGTCGATTACCACATCTGAGTCTGCCACCATCTCTGAGCCCTCATACAGCTTCAccctgcgcgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagttctctttatttatatgAAGTACATATGAATAGTGAATAGTTTAAATCTagcattttattaaatgtatactgTGTAGACGCATATTAAATATTAGAATAATGTAATGCttgtataatgttttaatttaacacattaaaatatttaaaggggtggtccactatggtATCAtattttagttgatgtgtaatgtagctgtatgaacataaacaacatctctaaatgtaagacggtcaaagttcaatgcaaagggagacattggcttttacacttagcaaagcctacagcgaacaaactttggggactacaaaaaaaatacttccgggttaatgatgtcataaactcTTCAGGTTACATACATACACCCTGCGCAGTGAAGGAGCATGTCCAGAAGCACTGTAATGTTTTAACAGAGATGCGGCTTGGTGATGTGGAGCTGATCTGTCAATCACagaacattatgttagctgaccaatcagagcctctagAGGGCGGGTCTTCGGAGCAACTAGGAAATATCCTTTTCATGTTAGGTGAgcagctgtatataatcaaagtaggatacataaaaaaaaaataacaacatgacTTTCTActaatgaagcatgagcacattgctttgcaccctgtaaacacaaccaagccttaaaaatacactctggaccacctctttaacaTTAGTTTAATAGTCCATTTTatacatacacagacagacacacacttatatagtgttataatgtacagtataattaATTATAACACATTCTACATGTATA
>TCONS_00020200
TCCTACGGGCAGGGAGGTGTGGGATGTTGTGCAGTGTTGTTCAATCTCCCGCCAATATTGCACTCGTCCCGGCCTCCCTGAC
>TCONS_00020201
TCCCGCCAATATTGCACTCGTCCCGGCCTCCCTGACCACGAGGAACACGCGACTCCCTGCTGTAATCTCCCGCCACAACAACCGCCGAACATATCGACCGCGAGGGCGGCGCCACACAGCAGGTGTTTGAGGTGTTTGATCCACAACACTTCTCCACGATGGATTGACAGACGCTGGTCAGTCTGGTTGTTTGGCCCGCACACAGACGGACTCCACACTGGTTTTAGGAAATGTAGAGAGACGGAGGGCGACTGGAGTTCTTCACACCTTTATGTGCATCAGAACCTGCTTACGGTGTGAACTGAAGTCCTCTGGAACGGTATCTGGAAAACATTTGGTTTGTCAGTGTGTTGTTTTATGCTCGTAGTGCTGTTCTTTTGTCAATAAACAACTGAATATGA

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043009 chordate embryonic development biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0048513 animal organ development biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0048869 cellular developmental process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0007389 pattern specification process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0007399 nervous system development biological_process
GO:0032501 multicellular organismal process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0032502 developmental process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0007417 central nervous system development biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0007420 brain development biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0048699 generation of neurons biological_process
GO:0060322 head development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0044391 ribosomal subunit cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0005829 cytosol cellular_component
GO:0005840 ribosome cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0001227 DNA-binding transcription repressor activity, RNA polymerase II-specific molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0003735 structural constituent of ribosome molecular_function
GO:0003755 peptidyl-prolyl cis-trans isomerase activity molecular_function
GO:0016859 cis-trans isomerase activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000089196 ENSDARG00000097750

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020199 False 1486 lncRNA 0.42 2 42897582 42901740
TCONS_00022017 False 1622 lncRNA 0.43 3 42897630 42901740
TCONS_00020200 False 82 miRNA 0.59 1 42898429 42898510
TCONS_00020201 True 401 lncRNA 0.51 2 42898475 42900680

Neighbor

gene id symbol gene type direction distance location
XLOC_010197 CR854827.2 coding upstream 19571 42876446 ~ 42878011 (+)
XLOC_010196 polr3glb coding upstream 54185 42829735 ~ 42843397 (+)
XLOC_010195 NA coding upstream 96851 42795604 ~ 42800731 (+)
XLOC_010194 NA coding upstream 115807 42772668 ~ 42781775 (+)
XLOC_010193 NA coding upstream 203919 42691059 ~ 42693663 (+)
XLOC_010199 NA coding downstream 139765 43041505 ~ 43048279 (+)
XLOC_010200 rundc3b coding downstream 176169 43077909 ~ 43118095 (+)
XLOC_010201 NA coding downstream 217310 43119050 ~ 43124236 (+)
XLOC_010202 dbf4 coding downstream 237764 43139504 ~ 43150489 (+)
XLOC_010203 adam22 coding downstream 250987 43152727 ~ 43284939 (+)
XLOC_010191 NA non-coding upstream 375646 42520706 ~ 42521936 (+)
XLOC_010208 NA non-coding downstream 785413 43687153 ~ 43687568 (+)
XLOC_010209 NA non-coding downstream 864239 43765979 ~ 43818565 (+)
XLOC_010211 CR925804.2 non-coding downstream 1703586 44605326 ~ 44605440 (+)

Expression


Co-expression Network