XLOC_001020 (si:dkeyp-57d7.4)


Basic Information

Item Value
gene id XLOC_001020
gene name si:dkeyp-57d7.4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 9230244 ~ 9231952 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001621
ATTCGCACATCGTTCCTCAGCCAAGCCCCTTTAAAGCCCCGGCATCCTATAAAGAGCCAAACCATTCCCGCGTGCCATTTCCAGAGTGACTGCGTCTGAAGAAAGAAGTGGATGTTCGGAACTCTGAAAACAAATAGCTGTCTTGATCATGCCAAAGACCACATCCCCTTCCTGCCGCACTGCACCTCCAAGACTGAATTCCTGTCCTACTTGTTCCTCTACATCTCCAAGATGCCTTTCCCACCTGTAACCAGACCTCGGAGTCTACCCAACTCCAGCAAAGAAAAACTTCCAGGACCGTCTCCTGTCATTCTGGTTACAACCACAGAAGAGAAAAGTTCTGTGAAGGAGCGGCTTAAAAAGTTGAGCAAGAAGGCCACGCCGCATAAAAGCAAGCTGCCCACCAGTCGAGCCACCTCAGGATTAAGGATGGAGGGAAGGAATACGTGGGTTTTGCCTTCAAGACCTGCAGGTCCAACAAGTTCCTCTAAAAGTACTTCAGGCATCCCGATCTCTACAACCAACACCTCAAGCAAGAAAAGGCTTCCTATTAGCGTTTCAGCAACAAGCATCCCAATGGAGCCTTCCAGTCCTCCAGCCTCCTCCGGATCAAGCCACGGATTGAATAGCGAATCAAACTTCTCTCTCAACTTAACTCCCGAGGCCACTTTGCTCCTGCAGAGACGCAACCGTGAGAAGCAGCTCCGCGCAAGTCGAAACAACTCAACATCCCTGCAACCTAAAGACCGTCTGGCGGCCAAGACAAGTTTTCGATCCAATATCCCATTGGTGAAGATCTCTCTTCTCAACGAGCGTCACCGATACGACGACGTGGAGTATGAGGAAGATGAAGAGCAAGGTGTGGATCAGAGCATCCTTCTGAAGTGTTCGGAATGGTTGCGAGGGGTGGAAAATGCTGCCGGAGCGACCGTTTTGGGAAGGGTGGATAAAATCAGTCAGAAGAGCATCTAACAGTTACTTGTGACTTAAACGTGGGAGTTGAGTAGTGGTCGACTGATGTGGGTCCTGCAATGTCCGAGACTGAACCAGCTGGGTGCCTTATGGCTGATACATGCTGAACAATTTATTACTTGCAGAAAATTAGGCGTAAATGTAATTCCCACCATTATTATAGCCAGTTTTCACGCTGCTACTGGTGTGTTTTAGATTGAGTCATTGGAAACCAACACTTCTTGATTTTAATGGACATGGATATTGGCTAATGATCGGTTTGCAACAGTAGGGAATGGAGCTAATACAAGCAAGGTCATGGGTTCAATTCCAAGGTAATGCATTCCtagcatgcattcatttatttatttttttatatatacaagcCAAATATAAGCTATGCATGATGTTGATCCACTGGCCTCTCAGTATTCTTGTGGAATTTTAGAAGTTCTGGACACATTTGGCAGCAAACCATGACAGAATCTGTGCTTGACTTGTCAAGTTCAGGCAACTGATTAACAGTGAAATGAATACATCATCTGATTTGAAGCTGAATAGGAATTGTATGATAATTATATCTACATTTAACTGTAAGACCATCCAGAGGTCAAGCTTACGATGCAACaagattgtgtttttaatttgtaaCGCAGTTTCTTTAAAAAGGGATTTGTACACTTCCAGTTTTACCCAATACCAAGTACCCAAAATGTTTATTGATCTAACTCTGAATAAAAGATGATCTCCATCCTCCC

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-141216-425 No description available

Ensembl:

ensembl_id ENSDARG00000101597

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001621 True 1709 mRNA 0.45 1 9230244 9231952

Neighbor

gene id symbol gene type direction distance location
XLOC_001019 gng13a coding downstream 2237 9227081 ~ 9228007 (-)
XLOC_001018 BX004779.1 coding downstream 32278 9197859 ~ 9197966 (-)
XLOC_001017 ern2 coding downstream 34484 9169807 ~ 9195760 (-)
XLOC_001016 BX004779.2 coding downstream 67607 9157310 ~ 9162637 (-)
XLOC_001015 NA coding downstream 91084 9138638 ~ 9139160 (-)
XLOC_001021 zgc:136472 coding upstream 2976 9234928 ~ 9249943 (-)
XLOC_001022 ubn1 coding upstream 26979 9258931 ~ 9278037 (-)
XLOC_001023 AL954703.1 coding upstream 76319 9308271 ~ 9321931 (-)
XLOC_001024 NA coding upstream 188872 9420824 ~ 9422275 (-)
XLOC_001025 micall2b coding upstream 227808 9459760 ~ 9486214 (-)
XLOC_001010 NA non-coding downstream 147472 9081842 ~ 9082772 (-)
XLOC_001009 NA non-coding downstream 249573 8978905 ~ 8980671 (-)
XLOC_001031 NA non-coding upstream 684424 9916376 ~ 9918812 (-)
XLOC_001037 CR854964.1 non-coding upstream 1038295 10270247 ~ 10272725 (-)
XLOC_001044 NA non-coding upstream 1439900 10671852 ~ 10682149 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000300_00829859_00830749 NA coding CI01000300 null 829089 ~ 830776 (-)