XLOC_010200 (rundc3b)


Basic Information

Item Value
gene id XLOC_010200
gene name rundc3b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 43077909 ~ 43118095 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020202
TTTCTATGGCCCCGGTGAGAGTCAGCGAGAGTCCGCGAGCTGGAGACTGATCCACAGCAGCATCAGAAGAGAAAAGGACGTAAAGAAATAAACAGCCGTGCATCGGACAGACACGACCATGGCATCGTTAAATCTCGGGTTCAGCGGGGCTCGTAAAAAAGCGGCGGCGCGCATCAGAGCTGTAGAGAGGAGGAATCTGATCACCGTGTgcagGTTCTCCGTGAAGACCCTCATTGATCGCTCATGTTTTGAGACGATAGACGACACGTCTGCTGAGTTCATCAACTTTGTTTCTATTCTAGAACATATTCTGAGCCACAGACTCAAGGGTCAAGTGAGCTGGTTTGGATATGAGAGTCCTCGTAGTTTTTGGGATTTCATCCGCATGGCGTGTAGTAAAGTCCCTCACAGCTGCATCCACAGCATCGAGAACATGGAGAACGTCCGCAGCTCCAGAGCGAAGGGTCGAGCCTGGATTAGAGTGGCGTTAATGGAGAAGCGTTTGTCTGAATACATTTCTGCTGCTCTCAGAGACTTCAAAACTACAAGGAGGTTTTACGAGGAGGGGGCTCTACTTCTGGGGGAGGAGGCTGGGCTTCTGGCGGACACCCTGATTGGCCTGAACGCCATCGACTTTAGCTTCTGCCTGAAGGGGGAGGGGCTTGATGAAGGCTGTCCCGTGGTCATCGACTACACACCTTACCTTAAATTCACTCAAACTTCTGACAGTATCAGCAGTGATGAGGAGGAGATGAGGACGCTGGGCAGCAGCGGCAGTGAAGCAGGAACTCCTGAATCCCACATGGCTGCCAGTCTGATGGCGGATCAGAGCAGCTGGTTCAGCAAGAGCAAGAGGCTGGAGCAGAAATACAGAGTCGTGCTGGAACAGAAGGGTTATCTGGAGGAGCTAGTGCGTCTCAGAGAagctcagctctctgagtctgtcTCTCAGAATAAAGCTCTCCTGCAGCGGCTCACCGACACCGAGATCAGCCACAAACTGGAGAAAGAGCAGCTCGAGATCATCATACTGGAGCTGCAGGATCAGCTGACGGTGTTGAAGAACCATGACCTCCGCTCCAGACAGGAGCTCACCTCGCACCTGACAAACCAGTGGCCTTCACCTGGAGCTCTGGATGGCAATGCCGTGGCTCTCGATACGCTCCTGTACAGAAAACGCACAGGCCCATGGGAAGAgaAGAGTTTCCCGAGTCTGGAGCAGCTTTCTGCAGATATGAGTCTCTCTCAAACATCTCTGGATCCTGTACAACTCAACACACACAGTCTGGACAGCAAAGCAGGACTTGCACACTGGCACAGAGAagGGAAAGAGGACACCCCATCTCTGAGGGGTTTGTGTGGATCTTTGACCTCAATGGCGAGTTACAAATCTCTGGCCAGTCTGAAGTCCAGCGAGTATCTGGCCAGTCCAACAACAGACATGACCAGCCCTGGACTGACCCCGTCCTGAGCACCAAGACTCAAGTATGGACATTTTACACACGCGCATAAACACACGGATGGAGAAACAAAAAGCTAGAGATGAGGCTGGTTTTACTTTCGTTTCAAGTGCAATTTCTTTCTCCTATGTGAATATTTGGTTGTGGAGGTCTAGAGCTACTGTTTGTGATTATTAAGTTATAATGAATGATGATGAACGACAATCTTGACTCAGGAGTGTTTGTGGGGAATTTGCCCAGCTCGAATgacttgctgtttttttttttttttttttttttttttttgcaaaggccATAGATTTCTTGCTCCTGTATGTGAAATTTGTCCTGTGTGGAATTACAGATTTGAACCCCGTTAA

Function

symbol description
rundc3b Is expressed in brain; gut; habenula; and yolk syncytial layer. Orthologous to human RUNDC3B (RUN domain containing 3B).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041114-121 Is expressed in brain; gut; habenula; and yolk syncytial layer. Orthologous to human RUNDC3B (RUN domain containing 3B).

Ensembl:

ensembl_id ENSDARG00000009961

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020202 True 1819 mRNA 0.50 11 43077909 43118095

Neighbor

gene id symbol gene type direction distance location
XLOC_010199 NA coding upstream 29630 43041505 ~ 43048279 (+)
XLOC_010198 NA coding upstream 176169 42897582 ~ 42901740 (+)
XLOC_010197 CR854827.2 coding upstream 199898 42876446 ~ 42878011 (+)
XLOC_010196 polr3glb coding upstream 234512 42829735 ~ 42843397 (+)
XLOC_010195 NA coding upstream 277178 42795604 ~ 42800731 (+)
XLOC_010201 NA coding downstream 955 43119050 ~ 43124236 (+)
XLOC_010202 dbf4 coding downstream 21409 43139504 ~ 43150489 (+)
XLOC_010203 adam22 coding downstream 34632 43152727 ~ 43284939 (+)
XLOC_010204 mrpl32 coding downstream 226380 43344475 ~ 43346916 (+)
XLOC_010205 ccdc127a coding downstream 229871 43347966 ~ 43350505 (+)
XLOC_010194 NA non-coding upstream 296134 42772668 ~ 42781775 (+)
XLOC_010208 NA non-coding downstream 569058 43687153 ~ 43687568 (+)
XLOC_010209 NA non-coding downstream 647884 43765979 ~ 43818565 (+)
XLOC_010211 CR925804.2 non-coding downstream 1487231 44605326 ~ 44605440 (+)
XLOC_010213 CR925804.1 non-coding downstream 1586277 44704372 ~ 44705154 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location