XLOC_010208


Basic Information

Item Value
gene id XLOC_010208
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 43687153 ~ 43687568 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021749
ATATTCAGCCACAGTTGCTAAGCAGAATCCATGTCTTATGTGTATTTTCGTCAGACATGTCAGACTTGTTTATAATGCGTCTCTCCACAGCTTGCATCAGCAGTTTTTTCTCCCTCCACATATACTTCCAGTATCAAATCTGTCAGATTTTACACCAGATGCTCGATTAGAAGTTTAATAAATGACCGAGAGGTCTGAACTCCTCCTGCATTTCTCTGCCGCGCAAACATGTGCTGACGAGGAAAAAATGCAGTGATGGAAGATGATGAAGTTCTGTCCCTGTTGCCTCAGATCTGATCCTCCATTGTGCATTTACTGTATGTGTTAATGTGTTTTGTGGTTCACtgatgctgtttttgttttttgtttatttatttatttatttagttatttttaactaAAGCAGGGGTCTCCAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021749 True 416 lncRNA 0.39 1 43687153 43687568

Neighbor

gene id symbol gene type direction distance location
XLOC_010207 sqlea coding upstream 273860 43401005 ~ 43413293 (+)
XLOC_010206 rnf144b coding upstream 294698 43368572 ~ 43392455 (+)
XLOC_010205 ccdc127a coding upstream 336648 43347966 ~ 43350505 (+)
XLOC_010204 mrpl32 coding upstream 340237 43344475 ~ 43346916 (+)
XLOC_010203 adam22 coding upstream 402214 43152727 ~ 43284939 (+)
XLOC_010209 NA coding downstream 78411 43765979 ~ 43818565 (+)
XLOC_010210 dpys coding downstream 611334 44298902 ~ 44325688 (+)
XLOC_010211 CR925804.2 coding downstream 917758 44605326 ~ 44605440 (+)
XLOC_010212 zgc:101716 coding downstream 990734 44678302 ~ 44687969 (+)
XLOC_010213 CR925804.1 coding downstream 1016804 44704372 ~ 44705154 (+)
XLOC_010201 NA non-coding upstream 562917 43119050 ~ 43124236 (+)
XLOC_010199 NA non-coding upstream 638874 43041505 ~ 43048279 (+)
XLOC_010198 NA non-coding upstream 785413 42897582 ~ 42901740 (+)
XLOC_010197 CR854827.2 non-coding upstream 809142 42876446 ~ 42878011 (+)
XLOC_010195 NA non-coding upstream 886422 42795604 ~ 42800731 (+)
XLOC_010216 FP085399.1 non-coding downstream 1515522 45203090 ~ 45206236 (+)
XLOC_010217 FP016247.1 non-coding downstream 1529739 45217307 ~ 45273719 (+)

Expression


Co-expression Network