XLOC_010209


Basic Information

Item Value
gene id XLOC_010209
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 43765979 ~ 43818565 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020211
AGGCTTCCGTTAATGCGGAAGTCTCTCTTTGCTGTTCAGGACTTTCATTCAAACATATGTGATATCATGTGTTTTCTGTTCTGTGGGTGAAGTGCACTCAAAACTGTAAAATGTTGCGCAAAAGGACTAACGGACGAGAAGATGCGGACAATGGCAATAAACCTGAGAGAAAGAAGACCCCAGAGGACTATAGTGTTACTGGTTCGACTGTCTCTCAGAAGAGCTGCTGGGCTGTTGTGTCTTTTTGGATGAAGGTTTTGCTCTTCGTCATCTTCACTCCAGCTTTCTTGAACTATGCCTCCCTGCAAAGAGAAGGACAGGTGTTGTCACCCACAGATGCTCATCTAATTGATATCGGCCTCGGAGAAAAGATCCATTTACACTGTAAAGGACATGGGCAACCAGTTGtCATTCTTGATGCTCCAGCAGGGATGTCTTCAGATATTTGGTTTCATGTGCAAGAGAGTCTTTCGTTTTCAACAAAGGTGTGCACTTACGACAGAGCTGGTCTGGGTTTTAGCCGAAGAGCCCTGCAGAATGAAACTACAGGCACAGAGAAGGTCTGGAGATTATCAACTACGGGCAGGATGGTGGATGACCTTCACCGATTGGTCAAGGCTGCAGATTTAGCCACAcccttcattctgattggctcTGAGCTAGGAACTCTCAACGGCAGGTTCTACAGCCACATTCATGATACGCAAGTGTCTGACCTGGTGCTGATCGATCCAATCCCCGAGGACGTCTTTGAGGAGCAGAAGTGGCAGCAGTTCTGgtACTCTCAGCTCATCCCATCTCTGCAGATGATGCAGTTCTCCGCAGCCGCAGGTTTGAGTCGTCTGCTCATTATTCTGGGTGTGCTGAAGCCGCTCATTCAGGGTGAACACATCTCGGAGGAGCTCCTGCAGCGACAGAAATATCTGCTGTGTAACCCTGCCCACCAGAGCGCTGCAGTGGATGAGCATTTCTTCCTCAATGAAAGCGCATCTCAAGTCAGCGAGATCTCCAGATATAAGCCTCTCTCCAGCAAGACATCTGTGCATGTGATCACGGGGGAATCGTTTGATGATCAGCTTCCTTCAGATCTCAACCGAGTGCTCGCCGAACTTCAGAGCAAGTTTTTGGAGCGCTCTTATCCCAATGCAAATCGCATTCAGATTCACGGGGCGGATCGGCACATGATCTACAAAAATCCATCTTCGCTTATCAAACATTTGCATAAGCTCGTGGCGCAAAGGCAGACCAACCAACAGAGGCAGTGAGATGCTTTGGAAAATGCAGACTTTCTTATAGCAAACATTGTCATTCTTCTCAGTATGAAGGTGGAATCTGTCTAGTTTGTTGGTGGATTGTGTATTTTGATgaactgctgaaaaaaataattgattgtttttgtgttttaggtTAAAATACCTTATTAGAAATGCAGCAACTTATCAAAAATGCCTCAGTTTGAtgcctcaatttttttttttagaaatgcatAACCCAAATTCATTACATAAATGTCATTTTTCTTCTTATGTAGACAGCTGTTACTTTCTATCTTCAATAATGCAAGATGCTAAATAACATTTTTCTGCGTATGAAGCAGGAATCTGTAGTTTGTTGATGGATTGTGCATTTTGATGAACTGctgaagaaaataattaattgtttctgtatttttgatgagaAAGCCTTATTAGAAATATAGTAACTTGTCAAAAACGCCTCAGTTAGAAATGTTGTATTGGAAAAATAATgctaaagaacttttttttttaagcatcaaaATTTTGGTCagaatttatttagaaaatatctgCCCTCAAATATTTGATGAACGCATAACCAGCCCAAATTCTTTACATAAACGCTGTCATTTTACTGCCTAGGAAGCAGAATTCTGTCTAGTTTGTTGGTGGATTGTGCAGTTTGATGAACTGCTGACCAAAATGATTgattgtttctgtgtttttggtTAAAATGCATGATTAGAAATGCGGTAACTTGTCAAAAACACCTCAATTTGACGcctcacatattttttttaatgcataaccaacccaaattctttaattaaatgctgTAATTTTCCTACTTATGTAGAGTTTAGTAACAGTCACAGCTGCCAATTTCTGTCTTCAATGATCCAAGATGCCAAATAACTTTGTCATTCTTCTGAGTATGAAGCTGAAATCTGTCTAGTTTGTTGGTGGATTGTGTAATTTGATgaactgctgaaaaaaataattgattgtttttgtgttttaggttaaaatacattattagaaATGCAGCAACTTATCAAAAATGCCTCAGTTTgatgccttaattttttttttttagaaatgcatAACCCAAATTCATTACATAAATGTCATTTTTCTTCTTATGTAGACAGCTGTTACTTTCTATCTTCAATAATGCAAGATGCTAAATAACATTTTTCTGCGTATGAAGCAGGAATCTGTAGTTTGTTGATGGATTGTGCATTTTGATGAACTGctgaagaaaataattaattgtttctgtatttttgatgagaAAGCCTTATTAGAAATATAGTAACTTGTCAAAAACGCCTCAGTTAGAAATGTTGTATTGGAAAAATAATgctaaagaacttttttttttaagcatcaaaATTTTGGTCagaatttatttagaaaatatctgCCCTCAAATATTTGATGAACGCATAACCAGCCCAAATTCTTTACATAAACGCTGTCATTTTACTGCCTAGGAAGCAGAATTCTGTCTAGTTTGTTGGTGGATTGTGCAGTTTGATGAACTGCTGACCAAAATGATTgattgtttctgtgtttttggtTAAAATGCATGATTAGAAATGCGGTAACTTGTCAAAAACACCTCAATTTGACGcctcacatattttttttaatgcataaccaacccaaattctttaattaaatgctgTAATTTTCCTACTTATGTAGAGTTTAGTAACAGTCACAGCTGCCAATTTCTGTCTTCAATGATCCAAGATGCCAAATAACTTTGTCATTCTTCTGAGTATGAAGCTGAAATCTGTCTAGTTTGTTGGTGGATTGTGTAATTTGATgaactgctgaaaaaaataattgattgtttttgtgttttaggttaaaatacattattagaaATGCAGCAACTTATCAAAAATGCCTCAGTTTgatgccttaatttttttttttagaaatgcatAACCCAAATTCATTACATAAATGTCATTTTTCTTCTTATGTAGACAGCTGTTACTTTCTATCTTCAATAATGCAAGATGCTAAATAACATTTTTCTGCGTATGAAGCAGGAATCTGTAGTTTGTTGATGGATTGTGCATTTTGATGAACTGctgaagaaaataattaattgtttctgtatttttgatgagaAAGCCTTATTAGAAATATAGTAACTTGTCAAAAACGCCTCAGTTAGAAATGTTGTATTGGAAAAATAATgctaaagaactttttttttttaagcatcaaaATTTTGGTCagaatttatttagaaaatatctgCAATCAAATATTTGATGAACGCATAACCAGCCCAAATTCTTTACATAAACGCTGTCATTTTACTGCCTAGGAAGCAGAATTCTGTCTAGTTTGTTGGTGGATTGTGCAGTTTGATGAACTGCTGACCAAAATGATTgattgtttctgtgtttttggtTAAAATGCATGATTAGAAATGCGGTAACTTGTCAAAAACACCTCAATTTGACGcctcacatatttttttttaatgcataaccaacccaaattctttaattaaatgctgTAATTTTCCTACTTATGTAGAGTTTAGTAACAGTCACAGCTGCCAATTTCTGTCTTCAATGATCCAAGATGCCAAATAACTTTGTCATTCTTCTGAGTATGAAGCTGAAATCTGTCTAGTTTGTTGGTGGATTGTGTATTTTGATGTACTGCTAAAGAAAATAATTGATCGATTCTTTGTTTTTAGTTAAACTAAGTTATTAGTCAAAAACACCTCAATTACAAATGTTTTGCATTGAAAATTAAGCCTAAATATCTTTTCTAAGCATCAACATTTTCGTTGTAATTAGTTACAATATCAGCTCTCAAATATTTCATAAATGCATAACCAACCCAAATTCTTTACTTTAATGCTGTAATGTTACGACTTATGTAGCAGAAATCTGTCATTTGTTGATGGATTGTGCATTTTGATGAactgctgaaaaaaattattgatcGTTTCCATGTTTTTGGTTAAAATAGAACTTGTCAAAAATTCCCTTAAATATTTTGCATTGAAAATTAACCCAGTGAACTTTTTTTAAGCATTAACATTTTTGTTGTAATTTGTCTATAAAATATCAGTcctcaaatattttataaaagtatAAACAACCCAAACTCTTTACTTAAATGTTGTCATTTTTCTACTTATGAAACAGAAATATATGTAGCTTGTTGGTGGATTAATCATTTTGATTAACTGCTGAAGAAATAATTTTACTGcttgttcttttttgttttgttttgttaaaaagccTTATTAGAAATGGAGTAACTTATCAAATACACCAAATTTTCACCTCGAGTAATTAGAAATGTTTCGCAATGAAAAATAACCCTAAGTGTCAacatttttgtcataatttacttaGAAAATACCTgcattcaaatattttataaatgcataaCCAACTCAAATTCTTTACGTAAATGCTGTCATTTACCTACTTATGAAGAAGAAATTTGTAGTTTGTTGGTGAAATGTGCATTTTGATGAACTGCTGAAGAAAACTATTgatcctttgtttgtttgtttttttgtttaaaatgcgTTATTAGAAATGCAATAACTTGTCAACAAGCATCAACATTTTTGTTGTAATTTACTCATAAAATATTTGCcctcaaatattttataaatgcataaCCAACCCAAATTCGTTACATAAACACTGTAATTTTTCTACTTATGAAACAGAAATCTGTCTAGTTTGTTGATAGATTTTGCATTTTGATgaactgctgaaaaaaatattagatttcTGTATTTTTGGTTAAAATGCATTATTAGAAATTCAGTAACTTGTTAAAAACGCCTCCGTTAGAAATGTTTTGCATTGAAGAATAACCCTAAAGAAAATAACCCTTTTTTTAAGCATCAACATTTTTGTTGTAAGTACTGTAGTTTACACAATATCAGCcctcaaatattttataaatgcataaCCAAGCCAAATTCTTTATTTAAATGCTGTCATTTTACTACTTATTAAGCCGAAATATGTGTAGGTGGATTACACATTTTGATTTACTgataaaaaatactttactggctgttttttttaagccTTATTAGAAATGCAGTAACTTGTCAAAAGCGCATCAGTTAGAAATGTTTTGCAATGAAAAATAACCCTAAGCGTCAACATTTTTGTCATAATCAAACTGCATAACAAACTCAAATTCTTTATGTTAACGCTGTCATTTTTTAATGAAGCAGAAATCTGTCTAGTTTGTTAGTGGATTGTGCATTTTGATTAAAAGGTAACTAAATTATTTTACTGCCtttatgttttttgttaaaaagctttattaaaaatgcagtaaCTTGTCAAAAACATCTAATTTTCACCCTGAATAATTAGAACTGTTGCATTGAAAAATAAACCTAAAGAACTTTTCGAAGcatc

Function

GO:

id name namespace
GO:0051146 striated muscle cell differentiation biological_process
GO:0043038 amino acid activation biological_process
GO:0043039 tRNA aminoacylation biological_process
GO:0006418 tRNA aminoacylation for protein translation biological_process
GO:0006457 protein folding biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0004812 aminoacyl-tRNA ligase activity molecular_function
GO:0016875 ligase activity, forming carbon-oxygen bonds molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020211 True 5677 lncRNA 0.34 11 43765979 43818565

Neighbor

gene id symbol gene type direction distance location
XLOC_010208 NA coding upstream 78411 43687153 ~ 43687568 (+)
XLOC_010207 sqlea coding upstream 352686 43401005 ~ 43413293 (+)
XLOC_010206 rnf144b coding upstream 373524 43368572 ~ 43392455 (+)
XLOC_010205 ccdc127a coding upstream 415474 43347966 ~ 43350505 (+)
XLOC_010204 mrpl32 coding upstream 419063 43344475 ~ 43346916 (+)
XLOC_010210 dpys coding downstream 480337 44298902 ~ 44325688 (+)
XLOC_010211 CR925804.2 coding downstream 786761 44605326 ~ 44605440 (+)
XLOC_010212 zgc:101716 coding downstream 859737 44678302 ~ 44687969 (+)
XLOC_010213 CR925804.1 coding downstream 885807 44704372 ~ 44705154 (+)
XLOC_010214 upk1a coding downstream 949796 44768361 ~ 44780744 (+)
XLOC_010201 NA non-coding upstream 641743 43119050 ~ 43124236 (+)
XLOC_010199 NA non-coding upstream 717700 43041505 ~ 43048279 (+)
XLOC_010198 NA non-coding upstream 864239 42897582 ~ 42901740 (+)
XLOC_010197 CR854827.2 non-coding upstream 887968 42876446 ~ 42878011 (+)
XLOC_010216 FP085399.1 non-coding downstream 1384525 45203090 ~ 45206236 (+)
XLOC_010217 FP016247.1 non-coding downstream 1398742 45217307 ~ 45273719 (+)
XLOC_010220 NA non-coding downstream 1637415 45455980 ~ 45691220 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000027_02742168_02773304 NA coding CI01000027 null 2742168 ~ 2773304 (-)