XLOC_010214 (upk1a)


Basic Information

Item Value
gene id XLOC_010214
gene name upk1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 44768361 ~ 44780744 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020218
AGCAGGTGCAATCTCAGACTGGAACAGCAGAGAGTGACCAGGCCAGAAATATTTAACAGCCATGGGAGCCGTGACATGTTTGATGGTTACAGTTGTTGGCTTGAATGCAATTGCTGCTGCAGCAGGACTGGCGTTATCTGCGGTGGCCATTTGGGTCGCAGTGGATGGATATAAACTCTACCCGATTTCTGGTGTATCAGGGAAAGACGACATCTTTGCTGGAGCCTGGATTGCCATATTTACAGGCTTTGCGTTCTTCCTCACATGCATCTTCGGCATCTTCGCTGCCCTGAAAAGGAGCCGTGCACTCATGCTGGTGTACCTTATCATAATGTTCATCATCTTTTTGTTTGAGTCCGCGTCTGCCATCACATCAGCAACCAACCGGGATTATCTGGTTGGGAACAGCAACCTTGTAAAGAAACAGATGCTCCAGTATTATGCAGACAGCAGCACACAAGGACAGCAGATTACAATGACATGGAACAACGTGATGACTCAGGTCCAGTGCTGTGGAGCTGACGGCCCGACGGACTGGATACAGTATAACTCCACCTACAGGCAGTTGTTTGGCGCTGCATCTCTATGGCCCCTCGGCTGCTGCAAGAGACAGAGTAGTAACTTTGAGGTGGTAGATCCTATAGGCTGTAAAGCTGGCGTGACGAGCAGCATGTTCACACAGGGTTGCTTCCAGTACATTGAATCGGTGTTAAGCCGTTATACCTGGGCTGTGAGCTGGTACGGTTTCTCCGTTCTCATGTTGGTGTTTTTCACATTAGTGATCGCCATGATTTACTACACACAGCTGCCCTAACAGCACGGACTCTTCAAGATGTCTACATTTCCCACACATCTGCTTCCACTCACATGCAATTAAATAAGTATACCAAGAATTGCAGATTGCACATTATAATAAAGCACATGGATAATTCATAAGACAAGAAAAAGTGTCTTGCAGCATGACAATTATgaacaactttttattttttattcctgtCTACATGCCATTTTTATGATTTGGTATAATTTGCACGTTTTAATTTGATGCCACGAAGGGAATGTTAGATCAAAAACATTAATGAGCATAATGAACTGCGGTAATGCTTGAAGTTTTAATTGATCAgcagtgatcatcctctcatgaTTGGCAACAaaatatttgctttttattttaagtaactgatccttattttattttacatgttttataaataaacaatagcaTGGggttattttaaatgtgcaatgCACTAGGATCTCCAAGCGATTGTTTTCATTTACTTGATGCCTCAGTCTACActtttcagggtttctgcaggttttattaAGTCCAATTTAAGACCATTAAGCATGAAATTTCAGagttatacactacctgacaaaagtcttgtcgttaatcccagttgtaaaagcaacaaataataacttgacttctagttgatcgatTGGAAAAGTGGCTTAGATttgtctgatgaatcatctgttgaactgcatcccaatcatcacaaatactgcagaagacctactgaaacccacatggacccaagattctcatagaaatcagtcaagtttggtaaatgATAAATCCTGGTTTGGGGttaacattcagtatgggggtgtgcgagagatctgcagagtggatggcaacatcaacagcctgaggtatcaagacatttgtgctgcccattacattacaaaacacaggagagaaaactcttcagcaggatcaaagttcttgaaagcaaagaaggtcaatgtgctcaGGGACTGGCCATCCCAATTACCAGAcaagaacattattgagcatgtctggggtaagatggagaaggcattgaagatgaatccaagtaATCTTGATGAACGCTGTGAGTCCACTAAGAaccctttctttgccattccagaagaCTATAAAGTCatataagtgatttgagtcattgagtcagagatgtatggatgcagtcctcatgggagtcagacacaataatAACAtggcatggtcatattttattttggtaaaataagtgtaatctagaggcctttgcctttaatttaagccacttctgataccaaaatgatcaactagaagtcaagttattatttgttgtttctaaaacttgaatagacgacaagacttctgtcaggcaGTGTACTGggttatggtttttttttttttctaatggccggGTATTATCATGAGAAAccgtgtaattgtttttagtttttattattattttttaaatattttttttatctagggaatttgctgtaaaaatgtcttaaGCTGTTGTGAATTTTAtctgcaataataaaaaaaaaacttaaaataaaaaa

Function

symbol description
upk1a Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human UPK1A (uroplakin 1A).

GO:

id name namespace
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060421-2603 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human UPK1A (uroplakin 1A).

Ensembl:

ensembl_id ENSDARG00000021866

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020218 True 2331 mRNA 0.40 8 44768361 44780744

Neighbor

gene id symbol gene type direction distance location
XLOC_010213 CR925804.1 coding upstream 63207 44704372 ~ 44705154 (+)
XLOC_010212 zgc:101716 coding upstream 80392 44678302 ~ 44687969 (+)
XLOC_010211 CR925804.2 coding upstream 162921 44605326 ~ 44605440 (+)
XLOC_010210 dpys coding upstream 442673 44298902 ~ 44325688 (+)
XLOC_010209 NA coding upstream 949796 43765979 ~ 43818565 (+)
XLOC_010215 cd22 coding downstream 125580 44906324 ~ 44917748 (+)
XLOC_010216 FP085399.1 coding downstream 422346 45203090 ~ 45206236 (+)
XLOC_010217 FP016247.1 coding downstream 436563 45217307 ~ 45273719 (+)
XLOC_010218 dnase2 coding downstream 556919 45337663 ~ 45357518 (+)
XLOC_010219 phf1 coding downstream 644163 45424907 ~ 45443805 (+)
XLOC_010208 NA non-coding upstream 1080793 43687153 ~ 43687568 (+)
XLOC_010201 NA non-coding upstream 1644125 43119050 ~ 43124236 (+)
XLOC_010220 NA non-coding downstream 675236 45455980 ~ 45691220 (+)
XLOC_010221 CU062666.1 non-coding downstream 807470 45588214 ~ 45588330 (+)
XLOC_010222 CU459129.1 non-coding downstream 885991 45666735 ~ 45666852 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G139484 NA unknown CI01000027 null 2227919 ~ 2228025 (-)