XLOC_010225


Basic Information

Item Value
gene id XLOC_010225
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 45787042 ~ 45812324 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00022027
GCGAGCTTTGATTCCTCTGCCGCGTGTCCCTGCTATGAACTGAACCTGCCACCTGGACTAATCAAGAGAGGAAAGTTGACACTTTTACTAATGTTTGAAGAAATCTCTTCATCCTGCGTTAAATATCTGCATATGTTGAATGGAGAACATTTCTTCTTTTGTTTCTCATTGAAAATGTCATCTTTATACAGCGTATCAGTTTGGAAGggagtaaaagCCTGCTTTCAGAAGTGTGTCATTTTTTATGGGCTGATCAACTGCTACTCCAGGATGTCCAGCAGCCCTGCATCAGGAGGTGCACTTCTTTTGGGCAGGTGCGAGGCCGCTCCAGCTCTCGGCCCTGCGTGATGCACTCAATGGCCTGGGGATAGGGTGAAGATTTCCCACAAAACGACTCCGAAGCTCCAGATGTCACTCTCTGTGGTGAACTTCCTGTACATAATGCTTTCCGGTGGCATCCAGCGAATGGGCAGCATCGTCCTGCCTCCGACCTGAGGATGTAAATGTGGACAAATCACTACCAAACATCTCTGCAGAGgACAGTTCCTTGTGGCCAGGTCTCTGTGGACAAAATGAAGGGACGCCAGGTACACCATTCCTGAGGCGATCTGAGCGGCAATGTGGAGCATCTGAGGAAGAGTCAACTGACCCATCGGAGGAACCTTCATCTCATCTAATATACGAGCATCGGGACCGTGAGCCCTGTACAAAAACAACACGCATTACAAAATATTGCGGGTTCTCCACAAAACTGGACAAGCCAGAATCCAGTGTGCCGTCATCTGAAGATGGAGGACTAGCACCGAAGTTCATGAAGCGGAGAGACACTGCCAGATCATCCTCGGTGCCCAGAACTGATGAACCTGTGGACAGAATGCACAGAAAATAAGTGGTTCCGAAAAAGCTCTGGTatggtatattttatttttccctaCCACATCTGTAAAAGTTGTGTTCACAATTGGCAGAA
>TCONS_00022028
TTTATGGGCTGATCAACTGCTACTCCAGGATGTCCAGCCCTGCATCAGGAGGTGCACTTCTTTTGGGCAGGTGCGAGGCCGCTCCAGCTCTCGGCCCTGCGTGATGCACTCAATGGCCTGGGGATAGGGTGAAGATTTCCCACAAAACGACTCCGAAGCTCCAGATGTCACTCTCTGTGGTGAACTTCCTGTACATAATGCTTTCCGGTGGCATCCAGCGAATGGGCAGCATCGTCCTGCCTCCGACCTGAGGATGTAAATGTGGACAAATCACTACCAAACATCTCTGCAGAGgACAGTTCCTTGTGGCCAGGTCTCTGTGGACAAAATGAAGGGACGCCAGGTACACCATTCCTGAGGCGATCTGAGCGGCAATGTGGAGCATCTGAGGAAGAGTCAACTGACCCATCGGAGGAACCTTCATCTCATCTAATATACGAGCATCGGGACCGTGAGCCCTGTACAAAAACAACACGCATTACAAAATATTGCGGGTTCTCCACAAAACTGGACAAGCCAGAATCCAGTGTGCCGTCATCTGAAGATGGAGGACTAGCACCGAAGTTCATGAAGCGGAGAGACACTGCCAGATCATCCTCGGTGCCCAGAACTGATGAACCTGTGGACAGAATGCACAGAAAATAAGTGGTTCCGAAAAAGCTCTGGTatggtatattttatttttccctaCCACATCTGTAAAAGTTGTGTTCACAATTGGCAGAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00022027 False 970 lncRNA 0.48 7 45787042 45812324
TCONS_00022028 True 726 lncRNA 0.50 5 45797162 45812324

Neighbor

gene id symbol gene type direction distance location
XLOC_010224 paqr6 coding upstream 4435 45739193 ~ 45782607 (+)
XLOC_010223 smg5 coding upstream 52829 45693413 ~ 45734213 (+)
XLOC_010220 NA coding upstream 95822 45455980 ~ 45691220 (+)
XLOC_010222 CU459129.1 coding upstream 120190 45666735 ~ 45666852 (+)
XLOC_010221 CU062666.1 coding upstream 198712 45588214 ~ 45588330 (+)
XLOC_010226 rbm8a coding downstream 109851 45922175 ~ 45930077 (+)
XLOC_010227 otud7b coding downstream 118638 45930962 ~ 45982657 (+)
XLOC_010228 NA coding downstream 176107 45988431 ~ 45990842 (+)
XLOC_010229 mtmr11 coding downstream 188632 46000956 ~ 46104010 (+)
XLOC_010230 sv2a coding downstream 299525 46111849 ~ 46202705 (+)
XLOC_010217 FP016247.1 non-coding upstream 513323 45217307 ~ 45273719 (+)
XLOC_010216 FP085399.1 non-coding upstream 580806 45203090 ~ 45206236 (+)
XLOC_010232 NA non-coding downstream 457400 46269724 ~ 46270888 (+)
XLOC_010233 NA non-coding downstream 464620 46276944 ~ 46282156 (+)
XLOC_010240 NA non-coding downstream 743070 46555394 ~ 46569152 (+)
XLOC_010241 NA non-coding downstream 744019 46556343 ~ 46569484 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00012524 NA coding CM030138.1 CM030138.1 20703429 ~ 20742998 (-)