CI01000062_03500344_03507001


Basic Information

Item Value
gene id CI01000062_03500344_03507001
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000062
NCBI id null
chromosome length 4496499
location 3499927 ~ 3507331 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000062_03500344_03507001.mRNA
AAATATCTCGAGAGTGCTTTTTAAAGGAAAGGTGGTTCAGTTTACTAGCTGCATTACGACTTGATTCAGGTCAGCGAACGTCTGCTCACAGGTAATGTTCATGTCAAAGTGACATTTTAGCATTAAACCAAAGCCAAAATTTCGTCGGAGAACATTTTGGGTTTTATCTGCGCAGTTGCAGACGTGACTAAAAAGTGAATGCGGTTTGAATGAGCTGAAAATAACACAAATATCCGGGATTTCCGGTGGGAATATACGGAAGAGAAGTGTTTTCTGCGCTACGTGGCCACCTGTGACAGCAGCAGCAGCTCGTATTGACAGTTTGACATGATGGAGTTTGACAGAGAAGAACATGGCAGCGAGAGGATCGATGAAACCTGCGAGAACGGTATTAACACCGAGACTCGCGCGCCCGGCACTGAGGAAGACCACAAACCATGTGAGGAAAATGAAGAACATCAGAAGTCTTGGAGTTTGGAGAGAAACTGGGGTTTTACTTTAGAGGAGCTCTTCAGACTTGCGCTGAAATTCTTTAAAGAGATGAATGGCAAAGCCTTCAACCCCACATATGAAGAAAACCTCCGCTTGGTTGCACTACATAAGCAAATCACTCTTGGCCCTTATAACCCAGAAGCATGTCCAGAAATTGGGTTTTTTGACGTGCTGGGAAATGACAGAAGGAAAGAATGGCTACGGCTTGGCAGCATGGCCAAAGAAGATGCCATGGAGGACTTTGTGAAGCTTCTGAACTCCTGTTGTGCTCTTTTTGCACCATATGTGACTTCACATAAGATTGAGAAGGAGGAACAAGAGAAGAGACAAAGGGAAGAGGAAGAACGTCTCAGACTGGAGAGAGAAGAGCAGGAGCGACAGCGACAGCAGATCATGGCTGTTTTGAATGCACAGACGACAGTGCAGTTTCAGCAGTATGCCAAACAGCAGTATCCAGACAATCCAGACCAGCAGCAGTTACTTATCAGACAGCTGCAGGAACAGCACTACCAACAATACATCCACCAGGCCCTCCGTCTACAGCAGATGGCCTCGCAGACGCAGCAGGAAGACTCAAATGTGACTCAGACATCAGAAGCTCTTCCTGCTCTTGTCTCAAATGAAGCAGTGCCCAACTTCAACCCCAACAGCCAATCAAAATCATTAGAGAATCAGGAACAACAGACAGACTCAAAAACTTTCCAGTTGTTTGTAGAAGGGAAATCAGCAGAAGCACCTGTCATCATTGCTCCGTCTATGTGGACACGGCCTCAGATTAAGGAGTTTAAGGAAAAGGTGTTGCACGATGAGGACTCAGTGATCACAGTGGGCCGAGGGGAGGTGTTGACAGTACGGGTGCCCACTCATCAGGATGGCTCACACTTATTTTGGGAATTTGCCACCGATCACTATGACATTGGTTTTGGGCTGTACTTTGAGTGGAAGGACTTGACCATTCCAACAATCACCAATGAAGGAGAATCTACTACTGACACTAAAGAAGGTACAGCACAAGCTGAACAAGAGAACCTGACAGAACAGGACAGATGTCCACTGGTAAGTGAGGTGGTTCCTGTTTCCCGTCGTGACAGCCACGAGGAAGTTTATGCAGGCAGCCACCAATATCCTGGTGAGGGAGTTCATCTTCTGAAATTTGACAATTCCTACTCCCTCTGGAGGCCAAAGGTTGTCTATTACAGAGTTTATTACACCAGATAAATATCACCAGACCATGTGCTGCATTTACTATCCACCTTTGTGAATATTGAGCGTCTTGATTCAACAGAGGCACAGTAATATGTTGAAATATAAGAAATATGTTGTTTTCTTCTAATGCAAAGGTATTTACATTGTGTTCCCATCGGTCTTTTCTACTGAAAGTCACATGAATCCTGCTTTGGTGTAATGATCAAAATTTTGGAAGTCCTGTTCTTTAGTAATTTATATTTTTTCCATGCAAGAAAACAATTTATTTTTCCAATATCTTATGTTTGTTATGTTGAATCAATGAAGGAGTGGTGTGTATATATATATATATATATATATATATTTTAATTGATGTGATTCAAGCACTTTAAACATAAAAAAAAAAAAAAAAAAAAATCATTTAAGAATTGCAAAACAGGTGATATTAAA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000062_03500344_03507001.mRNA True 2127 mRNA 0.43 8 3499927 3507331

Neighbor

gene id symbol gene type direction distance location
CI01000062_03470252_03479300 SNAP23.1 coding downstream 20627 3470101 ~ 3479300 (-)
CI01000062_03436291_03454196 RIN3 coding downstream 45369 3435437 ~ 3454558 (-)
CI01000062_03428921_03431581 NA coding downstream 68346 3428921 ~ 3431581 (-)
CI01000062_03211594_03253336 FUT8A, FUT8 coding downstream 246300 3210581 ~ 3253631 (-)
CI01000062_03067891_03127934 GPHNA, GPHNB, GPHN coding downstream 371993 3067606 ~ 3127934 (-)
CI01000062_03511363_03532823 XDH coding upstream 4025 3511356 ~ 3532823 (-)
CI01000062_03536428_03550126 NA coding upstream 28068 3535399 ~ 3550536 (-)
CI01000062_03556433_03560289 DNAJC27, DNAJC27.S, DNAJC27.L coding upstream 48872 3556203 ~ 3561013 (-)
CI01000062_03601436_03604051 POMCA coding upstream 93963 3601294 ~ 3604343 (-)
CI01000062_03619844_03628631 SNX9A coding upstream 111671 3619002 ~ 3628631 (-)
G261226 NA non-coding downstream 9147 3490563 ~ 3490780 (-)
G261222 NA non-coding downstream 12692 3484660 ~ 3487235 (-)
G261220 NA non-coding downstream 15747 3483104 ~ 3484180 (-)
G261187 NA non-coding downstream 120201 3379497 ~ 3379726 (-)
G261204 NA non-coding upstream 68582 3575913 ~ 3577974 (-)
G261239 NA non-coding upstream 108159 3615490 ~ 3615915 (-)
G261248 NA non-coding upstream 147828 3655159 ~ 3655391 (-)
G261285 NA non-coding upstream 191483 3698814 ~ 3699016 (-)
G261302 NA non-coding upstream 207881 3715212 ~ 3716217 (-)
CI01000062_00000216_00015634 EPRS other downstream 3484215 216 ~ 15712 (-)
G261400 NA other upstream 438104 3945435 ~ 3957385 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_011572 ACBD3 coding NC_007128.7 CM002901.2 33375469 ~ 33386590 (+)