XLOC_010316 (CR848746.1)


Basic Information

Item Value
gene id XLOC_010316
gene name CR848746.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 53325585 ~ 53326381 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020353
ATGTCGGATACGAAGGTAAAAGTGGCCGTCCGGGTTCGACCGATGAACCGCAGAGAGATTGAGCTCAACACTAAATGTGTGGTTGAGATGGAGGACAATCAGACCGTTCTGCACCCGCCGCCCTCCAATGCAAAAGGAGAAAGCAGGTACAGTTTCTCCCACACCATCATGTTAAGCCTCCTATCAATCTGA
>TCONS_00020354
GTCCGGGTTCGACCGATGAACCGCAGAGAGATTGAGCTCAACACTAAATGTGTGGTTGAGATGGAGGACAATCAGACCGTTCTGCACCCGCCGCCCTCCAATGCAAAAGGAGAAAGCAGAATTTAAGATGTTTTGGGCTCTTGTCAGAAGTACATGCAGGGCCTGTATTTTGGGCGTGCTCATGTGCTGGGGAACTTATTCTGCTGCTGCTGTGAAATTCCTGGACAGGCCTCGTGTTTTCAGCAGTGCTGGAGTTCGAGATGCCGTACAGTCGAGTCTTC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000097164

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020353 False 192 processed_transcript 0.51 2 53325585 53326123
TCONS_00020354 True 281 processed_transcript 0.51 3 53325612 53326381

Neighbor

gene id symbol gene type direction distance location
XLOC_010315 ptdss1a coding upstream 23132 53278406 ~ 53302453 (+)
XLOC_010314 si:ch211-269k10.5 coding upstream 53244 53252951 ~ 53272341 (+)
XLOC_010313 si:ch211-269k10.2 coding upstream 78211 53203370 ~ 53247374 (+)
XLOC_010312 FO905052.1 coding upstream 134097 53186147 ~ 53191488 (+)
XLOC_010311 CABZ01053976.1 coding upstream 171966 53125918 ~ 53153619 (+)
XLOC_010317 kif13a coding downstream 60704 53387085 ~ 53451351 (+)
XLOC_010318 rbm24b coding downstream 129257 53455638 ~ 53475519 (+)
XLOC_010319 grinab coding downstream 163295 53489676 ~ 53516433 (+)
XLOC_010320 smpd5 coding downstream 192667 53519048 ~ 53542242 (+)
XLOC_010321 CR759845.5 coding downstream 215974 53542355 ~ 53542469 (+)
XLOC_010310 NA non-coding upstream 222587 53066486 ~ 53102998 (+)
XLOC_010303 LO018250.1 non-coding upstream 914993 52385594 ~ 52410592 (+)
XLOC_010301 NA non-coding upstream 1093244 52230494 ~ 52232341 (+)
XLOC_010299 NA non-coding upstream 1262613 52060941 ~ 52062972 (+)
XLOC_010322 NA non-coding downstream 226844 53553225 ~ 53554066 (+)
XLOC_010323 NA non-coding downstream 242690 53569071 ~ 53573719 (+)
XLOC_010324 CR759845.4 non-coding downstream 248436 53574817 ~ 53582261 (+)
XLOC_010329 NA non-coding downstream 412680 53739061 ~ 53740784 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location