CI01000063_06335618_06338138 (HOXB8B)


Basic Information

Item Value
gene id CI01000063_06335618_06338138
gene name HOXB8B
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 6335618 ~ 6338283 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000063_06335618_06338138.mRNA
ATGAGTTCTTACTTCGTCAATTCCCTCTTCACTAAATTTAAAGGAGGCGATTCTCTGCGCTCCAACTACTATGATTGCTCAGGGTACGCGCCGGATCTTGGAGGCAGACCATCTGTGCTGTACGGTCACAACACAGGATCTGCGTTTCAGCACGCGGCTCAGTTCCCGGAATTCTACCACCACGGTACATCATCGTTCTCCCACGCGTCTTACCAACAGAATCCGTGCGCAGTTGCTTACTCTGGAGATGCCACGGGAAACATCTTGGGCCAGGACACTTTACAGAGACAGTCGTTCTTCAGCGCACCAGATGCGGATTTTACGCAATTTGGGGATTGTAATTTAAAGGTCAACAGTATCAGGGATGATTTGGAAAGTGCAGAACCGTGCACAGCGCAGCTCTTCCCATGGATGAGACCACAAGCTACCGGCCGGAGAAGGGGCAGGCAGACCTACAGCCGCTATCAGACGCTGGAACTGGAGAAAGAGTTCCTGTTCAATCCTTACCTGACCCGCAAGCGGCGCATCGAAGTATCTCACGCACTGGCCCTCACCGAGAGGCAGGTGAAGATCTGGTTTCAGAACAGGCGGATGAAGTGGAAAAAAGAACACAACAAAGACAAGTTTCCCAGCAGCAAAGCGGAACAGGAGGAAATTGAAAAACAGAGGCAAGAGGAGAGCCAGAATACTTTTGAGGTTACTGTTGCAGCGAGGGCATATGAGGAGAAGGATGTGGTCTGCATGGCGTCTATTTCCTATCTTCAAATGAGTATGAGTCACAATCCAAGATATGTTCTCTTCAGTAACTTTGTTACATCATATAAGATGGGTGATGAATCAGCATTAGTGAGTGCATTACTGTACCTCTTACTAGCTTTTGGCTGCCTTCAGTCTAGGACATTCATTGCCTGAGATTAAATATTTGAAGATACTGAACTCCTAGGGGCTCTCCTCTGTGTACACTCTGGTCTATAAATGTGGCGTGTAATATACTCTGCTATAGAGGGATTTGAAATTTATTTCATATTAGGCCTATATATTCGTTGCATTTTTTGAA

Function

symbol description
hoxb8b Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in central nervous system and paraxial mesoderm. Orthologous to human HOXB8 (homeobox B8).

NR:

description
homeodomain protein, partial

GO:

id name namespace
GO:0043565 sequence-specific DNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000063_06335618_06338138.mRNA False 1057 mRNA 0.47 4 6335618 6338283

Neighbor

gene id symbol gene type direction distance location
CI01000063_06320398_06332096 TTLL6 coding upstream 3486 6320398 ~ 6332132 (+)
CI01000063_06293923_06317422 SRCAP coding upstream 16545 6293923 ~ 6319073 (+)
CI01000063_06276811_06289690 FBRS coding upstream 45886 6276052 ~ 6289732 (+)
CI01000063_06264735_06268961 MSL1B, MSL1 coding upstream 66568 6264500 ~ 6269050 (+)
CI01000063_06222033_06227075 ZNF438 coding upstream 107953 6222033 ~ 6227665 (+)
CI01000063_06344484_06345613 HOXB6B coding downstream 6151 6344434 ~ 6346126 (+)
CI01000063_06347057_06348343 HOXB5B coding downstream 8354 6346637 ~ 6349040 (+)
CI01000063_06352595_06356492 NA coding downstream 14076 6352359 ~ 6357553 (+)
CI01000063_06358644_06359789 HOXB1B coding downstream 20036 6358319 ~ 6360115 (+)
CI01000063_06371168_06383580 NA coding downstream 31842 6370125 ~ 6383983 (+)
G265460 NA non-coding upstream 11994 6323277 ~ 6323624 (+)
G265334 NA non-coding upstream 61735 6270464 ~ 6273883 (+)
G265457 NA non-coding upstream 76351 6259057 ~ 6259267 (+)
G265456 NA non-coding upstream 76760 6258570 ~ 6258858 (+)
G265345 NA non-coding upstream 146949 6164331 ~ 6188669 (+)
G265463 NA non-coding downstream 369 6338652 ~ 6338867 (+)
CI01000063_06408168_06418415 NBR1 non-coding downstream 79917 6407762 ~ 6419326 (+)
G266176 NA non-coding downstream 313534 6651817 ~ 6653969 (+)
G266294 NA non-coding downstream 683022 7021305 ~ 7021509 (+)
G266299 NA non-coding downstream 687764 7026047 ~ 7026289 (+)
G265391 NA other upstream 416589 5913783 ~ 5919029 (+)
G262436 NA other upstream 3621101 2713615 ~ 2714517 (+)
G262423 NA other upstream 4092653 2241408 ~ 2242965 (+)
G262194 NA other upstream 5190611 1139352 ~ 1145007 (+)
G262060 NA other upstream 5625064 710110 ~ 710554 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_004759 hoxb8b coding NC_007123.7 CM002896.2 27117609 ~ 27120171 (+)