CI01000063_06928230_06954632 (CACNA1G)


Basic Information

Item Value
gene id CI01000063_06928230_06954632
gene name CACNA1G
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 6928230 ~ 6954632 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000063_06928230_06954632.mRNA
GTAGACGTGACCCTCTCAAAAGCTCCACCTAAGGTAGTTGATCCAAAACAAATCATTCAAACCAAGGAATCTCAAAACTGTGATATCATTTGTGATGTGAATGCAATAGAGTTTGTTAGTATGCTGAAGCTACTAAAGATGGCCGTGGGAATGCGAGCTCTGCTTGACACTGTGATCCAGGCCCTGCCTCAGGTGGGGAATCTGGGTCTTCTCTTCATGTTGCTCTTCTTCATCTTCGCTGCTCTGGGAGTGGAGCTCTTTGGTGATCTGATATGTGATGAGCTGCACCCCTGTGAAGGTCTCGGCCGTTATGCCACGTTCAAGAATTTTGGCATGGCTTTCCTCCTGCTGTTCCGTGTATCCACTGGGGACAACTGGAATGGCATTATGAAGGACACGCTCAGAGACTGCGGCCAGGACACCGGCATCTGCTACAACACAGTGGTGTCCCCCATTTATTTTGTGTCCTTCGTCCTGACGGCGCAGTTTGTGCTGGTCAATGTGGTGATCGCTGTGCTCATGAAGCACCTGGAGGAAAGCAACAAAGAGGCCAAGGAGGAGGCTGAGATGGAGCTGGAGGCTGCGGGTGGAGATGGAGGAATATCCCGAGGGCACATGCCACCTTTGGGACCTGGCGACATGGGTGGGCCAGGGGGGTCTCTTAGGATCTCAGGAGACTCTCGAGACTCTCGAGACCTGTCTAGACCGCTTTACCCCACAGACAGCCCACCTACAGACATACGAAGAGACTCTGAAGATCACATAAAGACAGATCCTGATCCTCCTCATAATTTGGAGCCGCCTTTAGAGACCACAGCTCCTCCAGATCCTCTAGACCCCCAGCAGCCAGACGAGCCAGCGGATGAGCACTTGCTGTACGTGAAGAAGACCTCAGTGGGCCGCACGCATTCTCTGCCCAATGACAGCTACATGTTCCAGCCGCTGCAGCCCAACTCGACCAACAGTACCCACACAACCTCACCTCACTTAGCTCAGACAGGATCTACAGGCTCTGTCCAGTCTCAAACAGAAGAACTCACGCAACACTTGACTGTGCCCTCCGATCTGTTCAGACCGATCAGTCCTCATAGCCTATCAGACTCAGAGAGCATCCCACGAATTCCCCCACCTCGCCGGGCACACACTCTCTCACGCACCCTACGCAGACAGGTGGCAGTGAGTGCTGACTCTCAGGAGACTCTATACACAGAGGGAGGGGAAAACGAGGGTCCCTTGGGACTTAGGGAACTGTCGGACCCCCCTGTCAACCTTCCACCTCAGCAGCAGCACCAGCCTTCGCTCTTTCTGGTCCCTGCCACTCCAGGCGCCTCCCCGAAACCTTCACGACCTAGCGTCCACACGCAGCACAACCCCTACGACCAGTACAACGTGTTCTCGAGGCGTTCCCACTCTCCGCCCCTACTACCGCCGCCACCAGCGGCTGCCAGAAAGCAGGAGGAAACAGACTCTGTGGATCAGGAGGTATCCCGAATTATCCGTGCGGGACTCGCAGAGAGGAGGAGCGATGATGGAATCGGAGGAGGGACGGGAGATCAAGGTGCAAGACGTCAGCTTAAAAAGTACCACAGCGTGGACACTCAGGGCCAGCGAGCTCTGCTGTTACCACGGCCCTTGTCCTGGCTCGACGACCCACGCCGGCACTCCATCGAGGTGTGCTCATCCGTGGAAAGCAGTCCCCAGCGTAGTTCGATCTCCTCCGGATTCGTCTCACGAGCTGACAGCCTCCAGCAGCAGTCCTCGCCACGCACCCGCAAGAAGAAAATGAGTCCACCGTGCATCTCCGAGGATCTGCCTGAGGGACCAGAGCTTCCGGTAGGCTTTCACCCTGCTCTGGGGATGGTGCCGCCCCCCTTGCCAAGCCGGGACACTTGCCTGAGGAGGCGCGCTCCCTCCAGTGACTCTAAAGACTCGTTTGACTTGGGTGGAGGAGGAGATGGGCTGCCTCAAGAGGCTGTCCCGAACTCCAAGCTATTGACTCTGCCTAGTTTCTCTTTTGAGAAAACAAGCTCTGAGCAC

Function

symbol description
cacna1g Predicted to enable low voltage-gated calcium channel activity and voltage-gated sodium channel activity. Predicted to be involved in several processes, including calcium ion import; neuronal action potential; and positive regulation of calcium ion-dependent exocytosis. Predicted to act upstream of or within calcium ion transmembrane transport and regulation of ion transmembrane transport. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be part of voltage-gated sodium channel complex. Predicted to be active in neuron projection. Is expressed in atrium and cardiac ventricle. Human ortholog(s) of this gene implicated in cerebellar ataxia type 42. Orthologous to human CACNA1G (calcium voltage-gated channel subunit alpha1 G).

GO: NA

KEGG:

id description
K04854 CACNA1G, CAV3.1; voltage-dependent calcium channel T type alpha-1G

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000063_06928230_06954632.mRNA True 2037 mRNA 0.56 8 6928230 6954632

Neighbor

gene id symbol gene type direction distance location
CI01000063_06733190_06869248 CACNA1G coding upstream 58982 6733190 ~ 6869248 (+)
CI01000063_06663858_06707601 SPATA20 coding upstream 220526 6663858 ~ 6707704 (+)
CI01000063_06641523_06649617 ETV4 coding upstream 278408 6641523 ~ 6649822 (+)
CI01000063_06579194_06585204 MEOX1 coding upstream 342682 6578738 ~ 6585548 (+)
CI01000063_06491111_06495718 NA coding upstream 431935 6489730 ~ 6496295 (+)
CI01000063_06982270_06983358 UTS2R coding downstream 27314 6981946 ~ 6983455 (+)
CI01000063_06990713_06993818 NA coding downstream 36008 6990640 ~ 6993852 (+)
CI01000063_07012391_07014164 NA coding downstream 57593 7012225 ~ 7016375 (+)
CI01000063_07079516_07080598 UTS2R coding downstream 124551 7079183 ~ 7081349 (+)
CI01000063_07120937_07121851 CDK5R1B, CDK5R1 coding downstream 165970 7120602 ~ 7125013 (+)
G266176 NA non-coding upstream 274261 6651817 ~ 6653969 (+)
CI01000063_06408168_06418415 NBR1 non-coding upstream 508904 6407762 ~ 6419326 (+)
G265463 NA non-coding upstream 589363 6338652 ~ 6338867 (+)
G265460 NA non-coding upstream 604606 6323277 ~ 6323624 (+)
G265334 NA non-coding upstream 654347 6270464 ~ 6273883 (+)
G266294 NA non-coding downstream 66673 7021305 ~ 7021509 (+)
G266299 NA non-coding downstream 71415 7026047 ~ 7026289 (+)
G266208 NA non-coding downstream 160405 7115037 ~ 7117317 (+)
G266171 NA non-coding downstream 173684 7128316 ~ 7149391 (+)
CI01000063_06335618_06338138 HOXB8B other upstream 590870 6335618 ~ 6338283 (+)
G265391 NA other upstream 1009201 5913783 ~ 5919029 (+)
G262436 NA other upstream 4213713 2713615 ~ 2714517 (+)
G262423 NA other upstream 4685265 2241408 ~ 2242965 (+)
G262194 NA other upstream 5783223 1139352 ~ 1145007 (+)

Expression


Co-expression Network