XLOC_001035 (rnf175)


Basic Information

Item Value
gene id XLOC_001035
gene name rnf175
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 10037444 ~ 10048514 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001655
GACTCACAAGAATGATTCGCTCGTAATGGAACCGGAGCAGAATGTCTGCCGGTAGAAACGGAGCCATTAATAGATGACCGGAATCTAAACTGGTATTAATAATGGCCGGCCTGCAACCACAGGATGATCTTCTGAAAATGTCTCACAGAGAATCGTGGAAGATGCAGCACGAGAGGCTACACGTGAAGCACAGAGGTCATGAGGCCATGCATGCAGAGATGGTCCTGATTCTCATCGCTACGCTAGTGGTCGCACAGATTGTCCTGGTTCAGTGGAAACAAAGACACTGCAGATCCTACAATATGGTCACACTGCTGCAGATGTGGGTGGTTCCTCTCTACTTCACCATCAAGCTTTACTGGTGGCGTTTTCTGTCCACATGGGGCATGTTCTCCGTCATCACCAGTTACGTCATATTCAGAGCCACACGCAAGCCTCTGTCCTGCAGGACGCCACGGATGGTGTATAAGTGGTTCCTCCTCATCTACAAGCTGAGCTATGCTGTGGGTGTGATTGGGTACCTCGCCATCATGTTCACCATGTTTGGATTCAACGTTTTCTTCAGGATTAAAGCAGAGGACTCGATGGATGTGGGTGTGATCATGCTTTTCTATGGCTTGTATTATGGAGTGATGGGACGTGATTTTGCAGAAATCTGCTCAGACTACATGGCGTCCACTATAGGGTACTATAACATGGGTGATATGCCATCCCGAAACCTCAACAATGATGTGTGTGCCGTGTGCGGTCAGAAGATTTTTGTGGATGTAGATGAGGAAGGCATTATTGAGGACACCTATCAGCTCTCCTGCAACCACACATTTCATGAATTCTGTATTCGTGGCTGGTGCATCGTGGGAAAAAAGCAAACATGTCCATACTGCAATGAGAAAGTGGACCTCAAACGGATGATGAATAACCCCTGGGAGAGAACTCATGTTTTATACGGGCAGCTGCTGGACTGGCTCAGGTATCTGGTGGCCTGGCAGCCAATCATCATCGGAATCGTCCACGGGATAAACTTTTCACTCGGACTTGAATAAGCCTCTCCAGTATTTGATTCTGTTTACAGCTGTGCATGTGTTcacctttataaatatttatcagAGAATTGTACACTTTATAATATAAATCAGACAGCtgcttttgctttttaatttattaGAAACATGGAACAGGCTTTTTTCAGAAGTGTCTTAATGCTGAAACAGAAGACGTACAGAAGCAAATCTAAACCTCTTTTTATCACTCCTAATCCAGATTGTGCCTCATCTTGTTTGTTCTGTTCATTTGTTGAATTGTGTAGCATTTGTTATGGTCTGTTTTAAGTAGCTGTGAATTTTGAGTGGTTATGTTCttactgtatgtgtttttgtctgtACAATGATGAGAGGTGAAGGGGATTGCCAAAGGTGTACTGGAGTCAGTATTTTTTTGGTTTATGTTGAgccaaaaaaacatgtttaacccCATAATGCGCTccgtttaaattaaaactattttcatGTGGCTACTGATA
>TCONS_00001654
GACTCACAAGAATGATTCGCTCGTAATGGAACCGGAGCAGAATGTCTGCCGGTAGAAACGGAGCCATTAATAGATGACCGGAATCTAAACTGGTATTAATAATGGCCGGCCTGCAACCACAGaataaagcaagtcataaaggtttggaaccacttgaggGATGATCTTCTGAAAATGTCTCACAGAGAATCGTGGAAGATGCAGCACGAGAGGCTACACGTGAAGCACAGAGGTCATGAGGCCATGCATGCAGAGATGGTCCTGATTCTCATCGCTACGCTAGTGGTCGCACAGATTGTCCTGGTTCAGTGGAAACAAAGACACTGCAGATCCTACAATATGGTCACACTGCTGCAGATGTGGGTGGTTCCTCTCTACTTCACCATCAAGCTTTACTGGTGGCGTTTTCTGTCCACATGGGGCATGTTCTCCGTCATCACCAGTTACGTCATATTCAGAGCCACACGCAAGCCTCTGTCCTGCAGGACGCCACGGATGGTGTATAAGTGGTTCCTCCTCATCTACAAGCTGAGCTATGCTGTGGGTGTGATTGGGTACCTCGCCATCATGTTCACCATGTTTGGATTCAACGTTTTCTTCAGGATTAAAGCAGAGGACTCGATGGATGTGGGTGTGATCATGCTTTTCTATGGCTTGTATTATGGAGTGATGGGACGTGATTTTGCAGAAATCTGCTCAGACTACATGGCGTCCACTATAGGGTACTATAACATGGGTGATATGCCATCCCGAAACCTCAACAATGATGTGTGTGCCGTGTGCGGTCAGAAGATTTTTGTGGATGTAGATGAGGAAGGCATTATTGAGGACACCTATCAGCTCTCCTGCAACCACACATTTCATGAATTCTGTATTCGTGGCTGGTGCATCGTGGGAAAAAAGCAAACATGTCCATACTGCAATGAGAAAGTGGACCTCAAACGGATGATGAATAACCCCTGGGAGAGAACTCATGTTTTATACGGGCAGCTGCTGGACTGGCTCAGGTATCTGGTGGCCTGGCAGCCAATCATCATCGGAATCGTCCACGGGATAAACTTTTCACTCGGACTTGAATAAGCCTCTCCAGTATTTGATTCTGTTTACAGCTGTGCATGTGTTcacctttataaatatttatcagAGAATTGTACACTTTATAATATAAATCAGACAGCtgcttttgctttttaatttattaGAAACATGGAACAGGCTTTTTTCAGAAGTGTCTTAATGCTGAAACAGAAGACGTACAGAAGCAAATCTAAACCTCTTTTTATCACTCCTAATCCAGATTGTGCCTCATCTTGTTTGTTCTGTTCATTTGTTGAATTGTGTAGCATTTGTTATGGTCTGTTTTAAGTAGCTGTGAATTTTGAGTGGTTATGTTCttactgtatgtgtttttgtctgtACAATGATGAGAGGTGAAGGGGATTGCCAAAGGTGTACTGGAGTCAGTATTTTTTTGGTTTATGTTGAgccaaaaaaacatgtttaacccCATAATGCGCTccgtttaaattaaaactattttcatGTGGCTACTGATA

Function

symbol description
rnf175 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in ubiquitin-dependent ERAD pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi membrane and endoplasmic reticulum membrane. Orthologous to human RNF175 (ring finger protein 175).

GO:

id name namespace
GO:0030968 endoplasmic reticulum unfolded protein response biological_process
GO:0030433 ubiquitin-dependent ERAD pathway biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0046872 metal ion binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1104 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in ubiquitin-dependent ERAD pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi membrane and endoplasmic reticulum membrane. Orthologous to human RNF175 (ring finger protein 175).

Ensembl:

ensembl_id ENSDARG00000037647

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001655 False 1519 mRNA 0.44 9 10037444 10048514
TCONS_00001654 True 1556 mRNA 0.44 10 10037444 10048514

Neighbor

gene id symbol gene type direction distance location
XLOC_001034 si:dkeyp-75b4.9 coding downstream 48604 9986675 ~ 9988840 (-)
XLOC_001033 si:dkeyp-75b4.7 coding downstream 56634 9972565 ~ 9980810 (-)
XLOC_001032 pgap6 coding downstream 96950 9919909 ~ 9940494 (-)
XLOC_001031 NA coding downstream 118632 9916376 ~ 9918812 (-)
XLOC_001030 C1H7orf26 coding downstream 152118 9873295 ~ 9885326 (-)
XLOC_001036 fga coding upstream 14987 10063501 ~ 10071539 (-)
XLOC_001037 CR854964.1 coding upstream 221733 10270247 ~ 10272725 (-)
XLOC_001038 FRMD7 coding upstream 288167 10336681 ~ 10347307 (-)
XLOC_001039 cnpy3 coding upstream 414178 10462692 ~ 10473630 (-)
XLOC_001040 trpc5a coding upstream 437579 10486093 ~ 10620459 (-)
XLOC_001024 NA non-coding downstream 615169 9420824 ~ 9422275 (-)
XLOC_001023 AL954703.1 non-coding downstream 715513 9308271 ~ 9321931 (-)
XLOC_001018 BX004779.1 non-coding downstream 839478 9197859 ~ 9197966 (-)
XLOC_001016 BX004779.2 non-coding downstream 874807 9157310 ~ 9162637 (-)
XLOC_001044 NA non-coding upstream 623338 10671852 ~ 10682149 (-)
XLOC_001045 NA non-coding upstream 690651 10739165 ~ 10740441 (-)
XLOC_001049 BX323090.1 non-coding upstream 821603 10870117 ~ 10870241 (-)
XLOC_001050 NA non-coding upstream 888210 10936724 ~ 10937815 (-)

Expression


Co-expression Network