XLOC_010396


Basic Information

Item Value
gene id XLOC_010396
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 4554071 ~ 4558497 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00022081
CTCAGATGTCCTCAATGATCTCTGATTGGCCAGCTTGCCTTACtcctctctgattggtcagatgtcccTTATTGATCAGATTGCATTATCTGTTGTGATTCCAGTCCAATATCTAAAGTCATCCTCTTCTTCCTGGACGTCGTCTATATTTAGTCTGCGAGTGAGTTGCTGGATGAAGCAGTCCCACGTACATCAGTGCGGTGATGCTGAAGTGTCCAGCCGTCCATCACAGGTCACACATGAAGTGGACTCTAGTGTTTCTCCAGCAGCCCAAAGGGGTGTTTTAATGCCATATAGGGCCTGATCGTTACCAAACTCCTCTTTAACTATTCATTGGGGACGCAGGTGCcaagtgttggtgtgtgtgtctCTCAGGCCAGAGGAAGACATGCTAATACCGGAGATAAGAGAACACGTATCCCTGACCGCCGACAGGATCCCAAACATCCAGCAGGAGCACAACACCGCCAGCTTGGGTTGCATTGGACTGTGTCAATTCATGGGATCTGCTCTCATCGCCAAGACAAAAGTAAGACCAGACTCTTCACGTCTCGGGAGTTTATGAGTGAGGATCATGTGTTTCAAAGCTTTGAGCTGAttcctccatcatcatcatcatggatCTTCCTCTTCCGGTGTCCCGGCTGGATGTGGATGTGGACCTGGGCTTCGCTCTGTTTTTTTTGGTGCTGC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00022081 True 693 lncRNA 0.49 2 4554071 4558497

Neighbor

gene id symbol gene type direction distance location
XLOC_010395 mrpl51 coding downstream 6878 4540981 ~ 4547193 (-)
XLOC_010393 ppp1r8b coding downstream 22414 4513597 ~ 4531657 (-)
XLOC_010394 BX927222.1 coding downstream 26424 4527481 ~ 4527647 (-)
XLOC_010392 vegfaa coding downstream 236192 4287542 ~ 4317879 (-)
XLOC_010391 CU469524.2 coding downstream 286335 4234727 ~ 4267736 (-)
XLOC_010397 arnt coding upstream 11920 4570417 ~ 4610278 (-)
XLOC_010398 cyp4t8 coding upstream 57164 4615661 ~ 4640578 (-)
XLOC_010399 NA coding upstream 127166 4685663 ~ 4695623 (-)
XLOC_010400 smpdl3b coding upstream 152480 4710977 ~ 4721629 (-)
XLOC_010401 rpa2 coding upstream 188091 4746588 ~ 4770233 (-)
XLOC_010626 CR392024.2 misc upstream 16336615 20895112 ~ 20895175 (-)
XLOC_010390 CU469524.1 non-coding downstream 342136 4210477 ~ 4211935 (-)
XLOC_010388 NA non-coding downstream 374104 4179036 ~ 4179967 (-)
XLOC_010386 NA non-coding downstream 757438 3784874 ~ 3796633 (-)
XLOC_010404 LO018201.1 non-coding upstream 503002 5061499 ~ 5061629 (-)
XLOC_010405 CU694364.1 non-coding upstream 548801 5107298 ~ 5107417 (-)
XLOC_010408 NA non-coding upstream 611278 5169775 ~ 5173443 (-)
XLOC_010409 NA non-coding upstream 894683 5453180 ~ 5588620 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000065_04953684_04953866 NA coding CI01000065 null 4953181 ~ 4954390 (-)