XLOC_010412 (si:dkey-283b15.2)


Basic Information

Item Value
gene id XLOC_010412
gene name si:dkey-283b15.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 5650495 ~ 5671862 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020468
GATGAGTACTTCAGGATAAACACGCAGACCTACAGGATCCACAGGAAGATCTGCTCTTCGGAGACAGCAGAGGATCATCAGACGGATTACTTGTAAATACACATGGTGTGTGTGAGCGGCTGATGACCTTGGAGAAGAGCAGGAGGCCGGAAAACTCACACTGAGCAGCAGCACACACTTTTACAGGATTTACAACACGAGTGCAATCCTCCAAAGCGACTCAAGAAGCAGAGAGAGAGATCTcatatcgATATGAGGTCTCCAATATCCTTGAGGAAGACGGCGCTCTTCTTCCTCGTCTGCTTACTTTCGGCATGCAGCGGAACTGGGATCCCAGGTTCGGATTATAACCCTCATCCTCGCTTCATTTGCACACCAATACCTGCAGATGCAGATCCTGGGTGCTTCCCGTCAGCGGGCGGCCCCAGTGCGGGTCACCACAGCGGGCCGAGCAGCGGTGGCAGCAACAGCTGGTGGGGAATTTCAGAAGAAGCCAAAACCACAATCCTGCATCTGCGGGAGAGTTTAGTCCAGCAGAAAGAAACCATCCTGGACCAGAGGGAGACCATCCGAGAGCTCACTGCTAAACTGAATCTATGCGAGGGCTTTAATCGCGGGGTGGGCAACCATGATGACCATCCGCATCGCACACCGACACACCTGGCACACCATGCACATCATGCTTACCCCACTGCACCGGAGCCTGGGCACCTAGCGTGGGCACCGCCACCCGACGCTCATCATGGTGGCCACGGGCTGGAGCTCGGCCACTACGGGGATGCAGCGCATCATCGTGGGAAGGCAGCAGTGAGCGAGAAGCATGTGACAGGGGAGATTCCTTTACTGTCCTCTACACCGGAGCAGATGAGCAGGATGCTGGAGACACTGAAGGAGCGCCTGGAGAACCTGCAGACGAGAAACACGTCGGCCAGCTACTCCAGTTCCCTGAAGGATCTCCTGCAGAGGAAGATCAGCGCTCTGGAGCAACAGATGCAGCATCATTCGTCTCCGCTGACGGGTGCATCTCACACTGACCACACCGAGCATGATGACGGTCACCATGATGACGATGATCATGATCATGGGCATCACGAGGATGGCCATGACGAAAGAGACCACGGCAATCCTCACGACGACAGCCATCACAGTGATCGCCATGAGGACGGTCACCACGATGACGACCATGATGACGGTCACCATGACAACGACGACCATGACGCCGGTCACCACGACAACGGGGATCATGATGATGATCACCACGACAATGGTCACCACGACAATGAGGTTTCCGAGCATGGCTTCGAGAGGTTGTTGTATAACCCACAGGGACACCGAGAGTCGCAGACTGGAGCTCACAGCAAACTGGACGCGGTTCTCAATCAGCTGCAGCACAGGCTTACTGAGGGTCCCCGAAAGAAGACTAAATCTACTGAGGCCTTCCAGATCGGCTTCCCCATGAGAACCAACTACATGTACGGCCGTGTGAAGCGCACGCTGCTGCACGAGATCTTCTCCTTCACGCTGTGTCTGTGGATGAAGGCTGGCATCGGCCCGGGCCTCGGCACACCCTTCTCTTACTCTGTCCCGGGTCAGGCAAATGAACTGGTGCTCATCGAGTGGGGAAACAACCCCATGGAGCTGCTGGTGGACGACAAAgcGGTCACTTTACCGCTGTCGTTGAGTGATGGTAAATGGCACCATGTGTGTGTGACGTGGTCAACGCGGGACGGTCTGTGGGAAGCCTATCAGGATGGGGTGAAGAGAGGATCTGGAGAAAACCTCTCGCCGTGGCATCCCATCAAACCCGGAGGAGTCTTCATACTGGGACAAGAGCAGGACACTCTGGGTGGGCGTTTCGACGCGACGCAGGCATTCGTAGGTGAAATTTCGGATGTGCAGATGTGGTCTCAGGTCCTCACTCCTCATGACGTCTATAGTCTGGCCTCCTGCGGCGGTCACATGACCGGTGACATCATCGCTTGGTCCGAGGCCACTGTGGAGCTGCACGGCGGTGTCACCAAATACCCCTTCGACCCCT

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-100921-93 No description available

Ensembl:

ensembl_id ENSDARG00000041382

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020468 True 2038 mRNA 0.56 7 5650495 5671862

Neighbor

gene id symbol gene type direction distance location
XLOC_010411 NA coding downstream 6757 5636286 ~ 5643738 (-)
XLOC_010410 CR848788.1 coding downstream 38015 5607138 ~ 5612480 (-)
XLOC_010409 NA coding downstream 61875 5453180 ~ 5588620 (-)
XLOC_010408 NA coding downstream 477052 5169775 ~ 5173443 (-)
XLOC_010407 dctn3 coding downstream 496463 5145132 ~ 5154032 (-)
XLOC_010413 ndufa3 coding upstream 45898 5717760 ~ 5721386 (-)
XLOC_010414 NA coding upstream 74446 5746308 ~ 5786042 (-)
XLOC_010415 trak1a coding upstream 114908 5786770 ~ 5873866 (-)
XLOC_010416 BX957314.1 coding upstream 198711 5870573 ~ 5870689 (-)
XLOC_010417 ctnnb1 coding upstream 510639 6182501 ~ 6205790 (-)
XLOC_010626 CR392024.2 misc upstream 15223250 20895112 ~ 20895175 (-)
XLOC_010405 CU694364.1 non-coding downstream 543078 5107298 ~ 5107417 (-)
XLOC_010404 LO018201.1 non-coding downstream 588866 5061499 ~ 5061629 (-)
XLOC_010418 NA non-coding upstream 576161 6248023 ~ 6249246 (-)
XLOC_010419 NA non-coding upstream 619311 6291173 ~ 6351690 (-)
XLOC_010421 NA non-coding upstream 711668 6383530 ~ 6386642 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000065_04876578_04886460 NA coding CI01000065 null 4875779 ~ 4887207 (-)
bowfin (Amia calva) AMCG00001974 NA misc PESF01000024.1 PESF01000024.1 40738 ~ 49765 (-)