XLOC_010439 (trim71)


Basic Information

Item Value
gene id XLOC_010439
gene name trim71
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 7742658 ~ 7793457 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020508
CGCGCTGTTGAGTTGTTGTCCGCGGCGGCGTCATTCATTCCCAATAAAAATGAAGGCGGATTGAAGAGGTGCGCGGGGAGAGCGTTGGTTTCACGCTGCAGACGCGAGACGAATATGGTTAGTTGAGACCATTACGCCAAACTACAGCAAGCGGACTGGGGGAAGTTAAAGGGGCTTTTCAGCCTCACCACAGTAACAGGATCTTGAGGGGCGCTGCGTGCTAACGAGCTACATGGGACAtactttgaattatttaattgcgGCTCGCGCAAGCGCGTTTTGACAATACTGACGCGCAGATGCTAGACTACAGCGCGTTGATGGAAAACGGACGTTTCTGCGCTTTGCACGGAAGAAAGTGACCGTGAATCAGCGTGGTTGGCCCCTCTCGTCATGCGGCGGTGGGGGAGGATCGGAGCAGGGACCTCGCAGCGGATTTTATGTTTCGCAACAATGTTAATGCCCCACACCGAGGGATTATAAGGCCTCAAAATGACACTTGGTTTCCAAATGGTTAAAGTGCACCCGCGAAGTTGCGCATAGAGTTTGTTCTGCGAAATAGTGtcgataacaacaacaacataaaagtcAAGAGAGCGCAGCTCCATCGAAACTCTTCAACAGGAATGTATTTGACAAGAATGTAGCCCACAGCACAGCCTGCTAAATCTGTAATCTGCATTAATTGATCAGGGAACCATTTCGGGAAAAGCCTTCGTGTGTCTTAACGCATCTTTATGTGTGAAGTTATTCTGTGGTCCTCTGCGCAAATGGCGTCTTTCCCAGACTCCGACCTGCAAACATGTCCGCTCTGCAAGGAGCTGTGCGGCTGCTCTGCTCCGATCTCCTCCAACTCATCTACCTCCTCCTCGTCCTCTCAGACCTCCAACTCCTCATCTACCTCATCCACCAGGAGACTGCACGTCCTGCCCTGTCTGCACGCCTTCTGCAGGCAGTGCCTGGAGGGCCAGCGGAGCCCCGGCGACCCCCTGAAGCTCAGATGCCCCACATGCGACCAAAAGGTGTCTCTGTCGGAGTCGGGCGTGGACGCGCTGCCCTCCTCCAACTTTCTCTTCAGCAACCTGCTGGACGTGGTGGTGTCCGCTGAAGAGCAGGGCAAGAACGGGCGGTCTTCTGCGGTGGTCCATCACGGTGGTCTTCTGCGACCCCAGCACCTCTCGGACCCCCAGTGCAGCTCTTGTGACGAGGGCAACCCCGCTACCTCCCACTGCCTGGACTGCCAGGAGTACCTGTGCGACAACTGCGTCAGGGCCCACCAGAGGGTCCGACTCACCAAAGACCACTTCATCGAGGGCCTGCTGGAGAGCCTACACCTGGCCAACCGCACCAACAACTCCAACACCCCGGTCTCCATCTCCCAGTCCTTCCACAACAGCTTCTCCATGCTCAATGTTTTCCAGGAGAGGATGGACTTTTGCCAGCACCATGATGACGCGGTCCTGCGGTTCTTCTGCGACAGCTGCACCGTGCCGATCTGTAGAGAGTGCAGTTTGGGCAGACACGCGGGTCACAGCTTCACATACCTACAGGACGCATTGCAGGATTCCAGAGCGCTGACCATCCAGCTCCTCGCAGACGCGCAGCAGGGCAGACAGGCCATACAGCTGAGCATCGAGAAAGCCCAGGCCATTGCTGAACAGGTGGAGCTGAAGGCTAAGGTTGTGCAGTCAGAAGTAAAAACAATCACTCTCCGTCATAAGAAAGCCCTGGAAGAACGGGAATGCGAGCTGCTTTGGAAGGTGGAGAAGATCCGCCAGGTGAAGGCAAAGTCACTCTACCTGCAGGTTGAGAAACTACATCAGAATCTCACGAAGCTGGATAGTACTATTGCCACAGTGACACAGGTTCTTGAAGAGGGCCGTAGCATAGACGTCCTGCTAGCCCGCGAGCACATGTTAAATCAACTACAGGAGCTCAAATCCCTCCGTTGCATTCTTCAGCCCCAAGAAGACGATCGCATCATGTTCACCCCTCCAGACCAGGCTCTTCTTATTGCCATCAAGTCCTTGGGCCTCATCAGCAGTGGAGCTTTCGCCACAGCATCCAAAGCTCACGGAGAAGGCATCAAGAGAGCGCTGCAAGGAAAGCCAGCATCCTTTACCGTTGTAGGATACGATCATGATGGAGAGCCTAGATTGTCCGGTGGTGACAGTGTCTCGGTCGTGCTTATGAGTCCGGATGGTAATCTGTCCAGTGCAGAGGTTTCCGACCACCAAGATGGAACGTACACGGTCAGCTATCTGCCTAAAGGCGAGGGGGAGCATTTGCTGTCTGTGCTTATATGCAATCAGCACATTGAGGGAAGTCCTTTCAAGGTGATGGTGAAGTCGGGTCGCAGTTACGGTGGTGTCGGTTTGCCCATGGCGTCTTTCGGTGGAGAAGGGGATGGGGACGGGCAACTGTGTCGACCTTGGGGGATCTGCGTGGATAAGGAGGGCTATGTGGTGGTCGCTGACCGAAGCAACAACCGTGTGCAGATCTTCAAGCCTTGTGGCACATTCCACCACAAGTTTGGCACTTTGGGCTCACGACCGGGCCAGTTTGACCGCCCTGCCGGGGTCGCCTGTGACAGCCAGAGGAGAATCATTGTGGCAGATAAGGACAATCACCGCATCCAGATCTTCACCTTCGATGGGCAGTTTCTTCTCAAGTTCGGTGAGAAGGGAACCAAAAATGGTCAGTTCAACTACCCATGGGATGTGGCCGTCAACTTCGAGGGGAAGATCTTGGTTTCAGATACACGCAACCACCGCGTGCAACTCTTTGGGCCTGACGGAACTTTCCTCAACAAGTATGGATTCGAAGGTGCCCTATGGAAACATTTCGACTCCCCTCGTGGCGTGGCCTTCAATCAGGAAGGTCACCTTGTTGTGACTGACTTCAACAATCATCGACTGCTCGTCATCAGGCCTGACTGCCAGTCTGCACGCTTCCTTGGATCCGAGGGAACTGGGAATGGCCAGTTCTTGCGGCCACAAGGTGTAGCCGTGGACCAGGAGGATCGTATTATCGTGGCGGACTCCCGCAACCATCGCATTCAGGTGTTCGAACCCAACGGCAACTTTTTATGCAAGTTTGGGACTCACGGTAATGGCTTCGGGCAAATGGATCGCCCCTCTGGTATAGCAGTGACCCCAGATGGAGTGATTGTGGCCGTGGATTTCGGAAACAACCGAATCCTCATGTTCTGACCTTTTTAAGATTTGAAATCCAAAACTGTGGACAAATAGAAAAGGAGATTTTGCACATCTATCAGGAGCAAATGCAGTTTGATCTTAGCGAGGTGACAGCAGTTGTAGGACTTTATAGTTTTGTACGATTCTCAATGATCACGTAACACCAAAATGCTTGCCGTTACAGCACAGTTTTGACTGCTGCAAGCTGAGAGCATTTCGCTTTTGGTATGTGtcttcaaatcttttttttttattattattttccttttttttctcagGGAATTTCTTGCATTCTTGAAATATTTTCTCTCTGCATTACACCTACCTCATCTAGCTTATGTATGAATGTACTCGCGTTTGTGCAGAGACCTAGTCGGTgaagttttgttaaaaaaaaattgtctacctcagtgttttttttttctcgtagAATGTGAGGGACATGacagataaaagaaaaaaagacaaacgaaaaaaaaaaaacttaaatgaagCAATGTTTGGATATTTGCACAGTTCGCACAATTTTTCCTTGATTGTTACTGTGCACAGAACGCAAGTTATATCCCTGAATGTTTCTCATAACTATGGACGAAAACAGAGCTGCATGTTTTGGCAGAAACATTAGGATAACGTTTTGATATATCTACTGCTATGTGTTCttttttttgtgtacattttaaaTCGGACATCATCTTTATCTCGTACCTCATCTAAACTTATTACCTCATTTACCGTATTATACCTCTGGGTCCATGAGCCTCATTACACCATTTACCTCACTTTATGGTCTTTTCCATTTGAAAAATTATGCAAGCAGTTACCAAAAATGAATGTTGTGTAACTGATGAAAGAGACTGCAAAGCTAGACTAATAATTTAAAGACCTTAAGACCTTCATAATATAATCAAGAGTTTTGCTCTGACTGTGAGAAACGCAGCAGCAGAACAAACACCATGactattttagaaattatgaaaAAAGTAGTGGATCTTCTTCAAAGAAGATCTTCAGGTCTTTTAGTTTCGCGGTGGGACATATTGACAGAATGTAGACACTAAATAGAATATCGAAGTGTAAAAATGGCCTAGcccttatctttttttttctttttcaaatgcaCGATTCAGGCAAGGTATTTATAAAGAACGTTAAAATATAGGcacatgaatgaatgactgacaaACAAGGATATAATCCaggactttttttcatttttgttttattttgaggcCGAGCTTGTAGGAGTCTCATTATGAACAGCTGCATCAGATCACAAGTTGGTTTTTGTTGTTCTATTGATTACAGCATAGCCTACAGTGTTTCCTGTGCCCATTTAAAGCAGGATCTCAAGGGAGACCATCCACTCCGTCAGCGTAACATCATTTGAAAACACTTAGAATCAATCGAGCCCAGTTTGAAATCGGATAGTTTGTGCCTGACTTGTGGGTAACCACTTTAAAGTGTTGTTTGCTTCTGCGTTCAATTGATTAGAAGAAGAAAGAGGAGTAGAAATATATAGCACTGGTATTCAGCGGAACAAAAGCACACGAGTCTCCCAATATAAACTTCTCTCGGAAGGAAAACGTGTAGGTCACTAAGATTACGTCATACCTCAAAACGTTTCTTGTTGTGTGAAGTTTTGCGAATGAGAATTAATCACTAAAGTCGTTCTGGGATTAACAGGTCCTTGTTCGTTTTTGTATGTTTCCCCGTTCTTCTCGTCTTAACATATGAGCGTTTATAGGAATTGCTTTCTGAATGCGTGCCGCACCACCGACTAGTCTGTACATATGTGTGGCAGGCCCACTTCCAGAACCTTAACCTTTGGGGTTAACTAGCATGATGTTTTGCGTTCGAGGTAAAATTGGAAATCGGGAAATCGTGGGAGGCCTAATTCGGAAAGTGCTCGCGTTTTCCTGTAGGCTGCAGTCAGCTTGTGTCCTGTCATGAGTATTAACGTGCTTGCATGTAGTTACCTGTGCCTTTCGTGATGCTAGATAAATCGAAATTTGAATGTCTTTGCCAAAGGGTGACTATAGGAAGTAGGCATGTGCCAAAAAAGGATTCCGAAAGTCACGGTTTTTGAGTATTTGTAAAGTGGATCTTTTTCGTTTCTTTGCGTATTACCTCATTCTAAACAAGATCTTCAATGTGGATCCTCAGGCATATTTATGTTGCGATTTAAAGGAGAgatgtgaattattattattattattatatgatgatGTTACTTTTTAAGAGTAGACAGTTAGATTTCGAAAATCGATAGGACTAGTGTGGGTATCGGAAGACCCCCGTTTGATGGATGTAAAGAGTTTATGCAATAAAGAAAGATTTGCTGCTTCCACCAACACAGATCTTCCCTGTCTTACAGTATTAATATCACGTTTGATCTGTTGACTATTTAGCGGTAAAGTTTTCACCCCTGCTCTCTTTAAGAGGCaactttaaatgtacttttattcatattatattattatttttgcatgctGTTAAAGTCCTTGTAGGCTGGTGGATGTAAAATGGAGGAAGGACTTTATACTgtaccaaaaacaaacaaacaaaaaaaaagtgaattatcATTTAAGTTGTGGTGAGTGGTTGACTATATGATTGTACTATTCCTAGATAGCTTTTCAGAGTAAGGTAACCTCATCCGTTCAGATGCCTTACCACAGCTTAGCTTTAGCTTTTTTTGGAATCGAATCAGAACTGGAAAACTGCCAAAGACCTCGTTCAAGTGAAGCCTCCGCGTGTGGATGTTATTTAtgaaaaccttttattttatttgctttagtTTGTCCAATCATTTTGGCGTCGATCATTCTAATATTTGAACACGCTGTCTGTTTTAACCGAGGACGTCGGAGTTTGTGTGAAACACGAGGTTTTGAGCAGGTGCCCTGCAGGACCAAAGATGGAGAGAATATTAAAGTAAACGTTTGAATCCAGCTCCCACGGTTATCATCGAAAACTGATCTCCGACTGTGTGGTGGTGGTAGTGTTGATTTTGGCTATAGAATCAGGCGGCCGTTTTATGTGGGATTTGACGACCCGAGAGAGATCAGTGTAGATAAAAGTATGTAAAACCCCTTTAGCGGTGATTTGGACACGTTACAAGTGTACATTTGAGAGACAATTCAAGGACTGAAACTGTGATCTAGATATTTAGTCGAACTCAGTCCGTGTCTTTGAATTTCAGATCATAGCCGTttgttttcgttttgttttgGACCTCTGGTCTCTAATTGTACGGGTTTTGTCACCATTTCTGGTGTATTCCAGCTTATGACTTCTTCCTTACTGgggaataacagaaaatgtaagtTCAGAATTGTGTGGTCGTAGACCCTTTTATTGATTGTATTatcttaaggaaaaaaaaaagagatgtgtatacacacattaaaacaaCTCAGGTAGCTTTGTAGAGATTTGATTAAAATTCAATATTTGTTTCCTACAGTTTGATAGTGAATCCTTTTGTTTAGTACCTCATGagctttttgtgtgttgttttgatGGTAAAATAATGCTGTTATTGAATACCATGGGATCATTTTCATCCATGTCACAGTGAGGGGGTGAACAATCCATAACCTTTAAACCAGCATGCGTctctctgttttgttttaaactaCCATCACAAGAAATAATTACCAGATGAATGGAATGTTTGCATTCAAAGGCTGCTACAAACTTCATTTGCCTTGAGATGATCAGAAATGCCTTCAAGCTTGATAAGACGCTAGTTTTGGGCAACTGTGTTTCTCGGATAGATGTTTAGACCTGTTTTTCAGGCACTGGCATATGTACATCAATACTTTCCAAAACCCTTAAAGTCtcagtgcttttttttaaagaggcttGGCTGTGAGACTGGCTAAGCGATGGCTTTGGGGAGATTCTGCCCCAAAGCTCTGACCTGGAATCAATTTTGCCTTTTAAAATACAACGATTAGGGTAGAATCAAAGTAGCAAATGCTGATTCCAGGTCAGTTGTCTTCTCAGGTGGATTATATTGGCTGAGGAGCCCTCCAAGAGGCCTGACATCTCTCtcggtttttgtgtgtgtgcgtgtgtgtgtgcgtgtgtgtgtgcgcgtgtgtgtgcgcgtgtgtgtgcgcgtgtgtgtgcgcgtgtgtgtgcgcgtgtgtgtgcgcgtgtgtgtgcgcgtgtgcgtgcgcgtgtgcgtgcgcgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgtgcgcgcgtgtgtgtgtgtaactttaCATCAGATCAGAGTCACCCCCTCAACCAAAGCAACAGAACGGTCATTTATTACTCTGAATAAGGCTGACGAGACTATATAAAATATGAAGTGGTCTGCGGTCTTGTTTTATCGTCTTTGTGGACTTTAAACATTtcctatgcagtttattttttttaatgtttggttgtttacaattaaataaagttGTACCTCTTTGGATT

Function

symbol description
trim71 Predicted to enable miRNA binding activity; translation repressor activity; and ubiquitin protein ligase activity. Acts upstream of or within embryonic body morphogenesis. Predicted to be located in P-body. Is expressed in several structures, including nervous system; neural tube; pectoral fin musculature; polster; and solid lens vesicle. Orthologous to human TRIM71 (tripartite motif containing 71).

GO:

id name namespace
GO:0072089 stem cell proliferation biological_process
GO:2000177 regulation of neural precursor cell proliferation biological_process
GO:0035278 miRNA mediated inhibition of translation biological_process
GO:0000082 G1/S transition of mitotic cell cycle biological_process
GO:0007275 multicellular organism development biological_process
GO:0031047 gene silencing by RNA biological_process
GO:0010172 embryonic body morphogenesis biological_process
GO:0060964 regulation of gene silencing by miRNA biological_process
GO:0017148 negative regulation of translation biological_process
GO:0008543 fibroblast growth factor receptor signaling pathway biological_process
GO:0021915 neural tube development biological_process
GO:0051865 protein autoubiquitination biological_process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0000209 protein polyubiquitination biological_process
GO:0010586 miRNA metabolic process biological_process
GO:0000932 P-body cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0035198 miRNA binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function
GO:0030371 translation repressor activity molecular_function

KEGG:

id description
ko04361 Axon regeneration
ko05206 MicroRNAs in cancer
ko03019 Messenger RNA biogenesis
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-040128-1 Predicted to enable miRNA binding activity; translation repressor activity; and ubiquitin protein ligase activity. Acts upstream of or within embryonic body morphogenesis. Predicted to be located in P-body. Is expressed in several structures, including nervous system; neural tube; pectoral fin musculature; polster; and solid lens vesicle. Orthologous to human TRIM71 (tripartite motif containing 71).

Ensembl:

ensembl_id ENSDARG00000075593

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020508 True 7688 mRNA 0.45 4 7742658 7793457

Neighbor

gene id symbol gene type direction distance location
XLOC_010438 BX511173.1 coding downstream 46442 7693881 ~ 7696216 (-)
XLOC_010437 pimr209 coding downstream 50090 7688368 ~ 7692568 (-)
XLOC_010436 NA coding downstream 121543 7508101 ~ 7621115 (-)
XLOC_010435 prdm1a coding downstream 299270 7430998 ~ 7443388 (-)
XLOC_010434 med18 coding downstream 363330 7376471 ~ 7379328 (-)
XLOC_010440 tcaim coding upstream 9273 7802730 ~ 7828848 (-)
XLOC_010441 NA coding upstream 40762 7834219 ~ 7881277 (-)
XLOC_010442 CU856516.1 coding upstream 174563 7968020 ~ 7984901 (-)
XLOC_010443 snrka coding upstream 254439 8047896 ~ 8132742 (-)
XLOC_010444 NA coding upstream 347255 8140712 ~ 8142312 (-)
XLOC_010626 CR392024.2 misc upstream 13101655 20895112 ~ 20895175 (-)
XLOC_010430 AL845419.1 non-coding downstream 913023 6828552 ~ 6829635 (-)
XLOC_010428 NA non-coding downstream 1090939 6648030 ~ 6651719 (-)
XLOC_010427 NA non-coding downstream 1107362 6605385 ~ 6635296 (-)
XLOC_010447 CR478208.1 non-coding upstream 494314 8287771 ~ 8288447 (-)
XLOC_010450 CU062417.1 non-coding upstream 685423 8478880 ~ 8479009 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000016_10600154_10633808 TRIM71 coding CI01000016 null 10599202 ~ 10633808 (-)
bowfin (Amia calva) AMCG00002536 trim71,LOC107657583,LOC107551222,LOC107723073,LOC107601676,LOC107704101,LOC107751884 coding CM030136.1 CM030136.1 18172131 ~ 18182627 (-)