XLOC_001045


Basic Information

Item Value
gene id XLOC_001045
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 10739165 ~ 10740441 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003342
tggtttgagttacttaaactttttgggttttacagtactcagttggtttgagttctcttcatttattgggttttactgtgctcaaattgcttcgtttacttaaATAGAttcagttcacagtactcattaggattagtttttgaacttcgtttttttagAGTCTCAGCTTTATTTTggttagtctttttttttccagtttagtTCGACATGAGAGCCTGTGGGACTCGTGAAACTTGACATTTTCTGATGTTTGACACTGATTGCGCACACCTACGAAACATCCCGATGGACAGGGTATTGCAATTAAATCTGAGAGAATCTAGAATAATCTTAATGGCTTtggcattattaacattcatgaCGAGTTTCTGCAGACCATGAGCATGTGCAAGAACAGAACGTTTAAGGTCACCACTTAATGAATACCGAATTCTTTTAGGACATTCGACCATGCCGTGCGACATCTTAAAGAAGTCGTAGAACGACAAGGCGAGGAagaaaataaagtggttaaacaaaaacaaagctacAGTAGCAGTTCGGTATGCGAATGACACCGTAAATCCAAAGGCAACACATACATTCAGTGAAAACGAATCAAAGTACAATCTTCCCCCTACATTGTAgtgattttaaggaaaaaaaggtTTATAACCCACCTAATACACCTAAAAGATGCAGCGTTAGAACATCAATACCCCCAAAAGGCAATGTTAAGAGGCCAGTGTATTTCCATTAAGTAACTATATATATGTAGGCACGTTTGACAAATGAAGCTGAATCACACACATGGCGTGGCTCGAAACAACCTACATATGCAACTACTGTGCACTTTCTAAATATAGGGAAATCACACGAGGCAGCAATACAATACAAGAGGGACAAAACAGTGCGGGCTACATCGGTCGAGGAAATgtaatttacaataaaacaacatGCCCCTCTGATGGCGGGCAGTTCGTGAGTAGAATAAATATCCTATGCTATATGGCTAATCCTCCGGGCGTTTACGTTCTAACCCTAGACTGAAAGCAGAAAGCTTGAAGTAAAGAGTACAGACAATGTTCAGTCCCACATGATGGTGTTGTTTTTagaattgcgtttttttttttttgtgtatatatacagcGGGTAAAAATAGTATTAAACAAGTCATGA

Function

GO:

id name namespace
GO:0033693 neurofilament bundle assembly biological_process
GO:0031033 myosin filament organization biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0003012 muscle system process biological_process
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0051015 actin filament binding molecular_function
GO:0003779 actin binding molecular_function
GO:0044877 protein-containing complex binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003342 True 1158 lncRNA 0.38 2 10739165 10740441

Neighbor

gene id symbol gene type direction distance location
XLOC_001044 NA coding downstream 57016 10671852 ~ 10682149 (-)
XLOC_001043 si:dkey-31e10.5 coding downstream 69729 10667447 ~ 10669436 (-)
XLOC_001042 si:dkey-31e10.1 coding downstream 91681 10642322 ~ 10647484 (-)
XLOC_001041 zgc:174945 coding downstream 98417 10636064 ~ 10640748 (-)
XLOC_001040 trpc5a coding downstream 118706 10486093 ~ 10620459 (-)
XLOC_001046 si:ch73-222h13.1 coding upstream 43229 10783670 ~ 10806625 (-)
XLOC_001047 crfb15 coding upstream 69163 10809604 ~ 10821584 (-)
XLOC_001048 dmd coding upstream 83910 10824351 ~ 11075405 (-)
XLOC_001049 BX323090.1 coding upstream 129676 10870117 ~ 10870241 (-)
XLOC_001050 NA coding upstream 196283 10936724 ~ 10937815 (-)
XLOC_001037 CR854964.1 non-coding downstream 466440 10270247 ~ 10272725 (-)
XLOC_001031 NA non-coding downstream 820353 9916376 ~ 9918812 (-)
XLOC_001024 NA non-coding downstream 1316890 9420824 ~ 9422275 (-)
XLOC_001023 AL954703.1 non-coding downstream 1417234 9308271 ~ 9321931 (-)
XLOC_001051 BX004756.1 non-coding upstream 322083 11062524 ~ 11062647 (-)
XLOC_001054 NA non-coding upstream 730349 11470790 ~ 11517353 (-)
XLOC_001061 NA non-coding upstream 952716 11693157 ~ 11695392 (-)

Expression


Co-expression Network