XLOC_010452


Basic Information

Item Value
gene id XLOC_010452
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 8668981 ~ 8679462 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00022116
GCAGAGTTGGGATAATCCGGGAATAACAAAAGATCATGATAATCAGAGGGAAAACCAAGCTCAGAAGGTTCATGTTAATGTAGGTGAAGGACATCCAGGATGTATTATCAGGAAAATCAGGTCGGCATGAACTTTTGCTGTTTGTCCCATTATTAGCATTGGCAAAAATGATGTTAGGTAGGGACGCAAACAGGCTGAGCATCCACACCAACGAGGCCAGAGCCAAACCCATTTTTGTAGAGCGATTTCTGGAGAACACACTGTGGGCATGAACAATGATGGCATAGCGATCCAGTGTCATGAGAACCATGAAGAAGATGCTGGCATAGAGACCAATCATGAAGAGACCTGTTATGGTGTGACACATAAACCTGCCCAAAATCCACTCATCCATGGCATTGTGAGCCCAGAACGGAAGTGACACAAGGAAGATTAGGTCAGCTAGGGCTAGGTTGAAGAGGCACACGTCTGTCATGTTGGATTTTTGACGATGTCTAATGAGGACCCAGACGACCAGACCATTTCCAATGAAGCCAACGATGAAAACGATACTGTACAGGGTGGGAAGGAAAACCTCACTGAAAGCCTTTGCGTTGCCATTGTTGCATGGGGGTGCTACATGCCCAGTTTCGTTATAATTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00022116 True 641 lncRNA 0.46 2 8668981 8679462

Neighbor

gene id symbol gene type direction distance location
XLOC_010451 cobl coding downstream 5429 8529772 ~ 8663552 (-)
XLOC_010449 grb10b coding downstream 148507 8364085 ~ 8520474 (-)
XLOC_010450 CU062417.1 coding downstream 189972 8478880 ~ 8479009 (-)
XLOC_010448 ddc coding downstream 326232 8298542 ~ 8342749 (-)
XLOC_010447 CR478208.1 coding downstream 380534 8287771 ~ 8288447 (-)
XLOC_010453 triob coding upstream 72353 8751815 ~ 8927425 (-)
XLOC_010454 adcy2a coding upstream 596227 9275689 ~ 9383629 (-)
XLOC_010455 CR394537.1 coding upstream 622617 9302079 ~ 9302194 (-)
XLOC_010456 ccr8.1 coding upstream 741540 9421002 ~ 9425451 (-)
XLOC_010457 prpf3 coding upstream 754276 9433738 ~ 9453591 (-)
XLOC_010626 CR392024.2 misc upstream 12215650 20895112 ~ 20895175 (-)
XLOC_010444 NA non-coding downstream 526669 8140712 ~ 8142312 (-)
XLOC_010442 CU856516.1 non-coding downstream 684080 7968020 ~ 7984901 (-)
XLOC_010441 NA non-coding downstream 787704 7834219 ~ 7881277 (-)
XLOC_010458 FO704756.1 non-coding upstream 885041 9564503 ~ 9566371 (-)
XLOC_010461 NA non-coding upstream 1079714 9759176 ~ 9761753 (-)
XLOC_010466 NA non-coding upstream 1333523 10012985 ~ 10013605 (-)
XLOC_010472 NA non-coding upstream 1741708 10421170 ~ 10429893 (-)

Expression


Co-expression Network