XLOC_010453 (triob)


Basic Information

Item Value
gene id XLOC_010453
gene name triob
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 8751815 ~ 8927425 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020532
GGGTTCCACAGAAATGAAGACATGAAGGCCATTGAAGTTCTTCCCATACTTAAAGAGAAGGTGGCGTTCTTATCAGGTGGAAGAGATCGGCGTGGAGGACCAGTCCTTACATTTCCAGCCAGAAGTAACCATGACAGAATACGACAAGAAGACCTCAGGCGACTTATTGCGTACCTCGCAGGCATCCCCAGCGAGGAGGTGAGCAGGCATGGCTTCACGGTCATCGTGGATATGCGAGGATCCAAATGGGATTCTATCAAACCTCTGCTGAAGATCCTGCAGGAGTCCTTTCCTTCCTGCATCCACGTCGCTCTCATCATCAAGCCTGACAACTTCTGGCAGAAGCAGAGGACCAATTTTGGCAGTTCAAAGTTTGAATTTGAGACCATCATGGTGTCCCTCGAGGGTTTGACCAAAGTGGTGGATCCATCCCAGCTGACTCCAGACTTCGAAGGCAGTCTTGATTACGACCATGAGGAGTGGATCGAAGTTCGAGTGGCCTTCGAAGACTTCACAAGCAATGCAGCTCGCATACTAGCCCGTTTAGAAGAACTCCAAGACATGCTGTCCCAGCGGGAGCTGCCGTCCGACCTCGATGGGTCTCGGCGTGCCATGGAGGAACACGCTTCCCTCAAGAAAAAGGTGACTAAAGCCCCTGTGGAGGAGTTAGATACTGAAGGTCAGCACCTACTGCAGCGAATCCAGTGTGCGGATAAAGGAAGAGGGGATatccagggtttagctccaaaaGTCCAGGCGCTCCTGGATAAACTTCACGGCACTCGCCAGCATCTGCACCAAGCCTGGCACTTGCGCAAACTCAAACTGGACCAGTGCTTTCAGCTGCGACTCTTTCAGCAGGACGCAGAGAAGATGTTCGATTGGATTGTCCACAATAAAGGCCTGTTCCTGACCACCTACACCGAGATAGGAGCCAACCATCAGCACGTGATGGAGCTGCAGACACAACACAACCACTTTGCGATGAACTGCATGAATGTGTACGTGAACATCAGTCGGATTATGTCAGTGGGGAACAGGCTGCTGGAGTCAGGTCACTATGCGACCCAGCAGATTCAGCAGATCTCAGGTCAGCTGGAGCAAGAGTGGAAAGCATTCGCCGCTGCACTGGACGAGAGAAGTACACTGTTGGAAATGTCTGCCAACTTCCACCAGAAAACTGACCAGTATATGAGCAACATGGACTCATGGTGTAAGGCCTGTGGAGAAGGCGAACTTCCTTCTGAGCTACAGGACCTGGAAGACACCATTCACCACCACCAGGGTCTCTATGAACACATCACTGCTGCTTATTCTGAAGTAAGTCAGGATGGCAAAGCCCTGCTAGATAAGCTCCAGCGCCCTTTGACCCCGGGCAGTGCTGATTCGCTGACTTCCTCGGCTAACTACTCCAAGGCTGTTCATCACGTTCTGGATATCATTCATGAGGTTCTGCATCACCAGAGGCAGTTGGAGAACATCTGGCAACACCGCAAACTCCGTCTCCACCAACGGCTGCAGCTTTGCGTCTTCCAACAGGACGTTCAGCAGGTTCTAGATTGGATTGAAAACCACGGAGAGGCATTTCTGAGTAAGCACACAGGAGTGGGGAAGTCCCTGCACAGAGCTCGAGCATTACAGAAACGCCATGAGGACTTTGAAGAGGTGGCTCAGAATACCTACACCAATGCAGACAAACTGCTGGAGGCGGCGGAGCAGCTGGCTCAGACGGGCGAGTGTGACCCCGAGGAGATTTACCAGGCTGCTCATCAGCTGGAGGACCGTATCCAGGACTTTGTAAGGCGTGTTGAACAGCGCAAAGTCCTGCTCGACATGTCTGTGGCCTTCCATACACACAGCAAAGAGCTGTGGACGTGGTTGGAGGAGCTTCAGAAGGAGTTGTTGGATGATGTTTATGCCGAGTCAGTGGAGGCGGTGCAGGAGCTGATCAAGCGCTTTGGTCAACAGCAGCAAACCACCCTGCAAGTCACCGTCAACGTCATTAAAGAAGGGGAGGATCTCATACAGCAGCTCAGAGACTCCGCAATCTCTAGCAATAAGACTCCTCATAACAGCTCGATGGCACACATCGAGAGTGTCCTGCAGCAGCTGGATGAGGCTCAGGCTCAGATGGAGGAGCTGTTTCAGGAACGCAAGATCAAACTCGAACTTTTCCTCCAGCTCAGGATCTTTGAACGAGATGCGATTGACGTGATTTCAGACCTGGAGTCGTGGAATGAGGAGCTCTCTCAGCAGATGAACGAGTTTGACACTGAAGATCTGACGCTCGCTGAGCAGAGACTACAGCACCATGCTGATAAAGCCCTCACCATGAACAACCTCACCTTCCACGTCATACACCAGGGACAGGAACTACTGCAGTACGTCACAGAAGTTCAGGCctcagGTGTGGAGCTCTTGTGCGACCGTGATGTTGACATGGCGACGCGGGTGCAGGACCTGCTGGATTTCCTGCATGAGAAGCAGCAGGAGCTGGATGCAGCCGCAGAGCAGCACAGGCGACACCTGGAGCAGTGTGTGCAGCTCCGACACTTACAGGCAGAGGTCAAACAGGTTCTGGGCTGGATTCGTAATGGCGAGTCAATGCTCAATGCCGGTTTGATCACAGCCAGCTCACTGCAAGAGGCGGAACAGCTGCAGCGGGAACATGAGCAATTTCAGCACGCTATTGAGAAAACCCATCAGAGTGCACTACAGGTCCAGCAGAAGGCAGAGGCTCTACTACAGGCCAATCACTACGACATGGACATGATCCGTGACTGTGCGGAGAAGGTGGCATCTCACTGGCAGCAGCTCATGCTGAAGATGGAGGACCGCCTAAAACTAGTCAATGCCTCCGTGGCTTTCTACAAGACATCAGAGCAGgtgTGTAGTGTACTGGAAAGTTTAGAGCAGGAATACAAGCGAGAGGAAGACTGGTGTGGAGGAACTGATAAACTGGGACCAAACTCTGAGTCTGACCACGTGACACCCATGGTCAGTAAACACCTGGAGCAGAAGGAGGCCTTTCTAAAGGCTTGCACACTAGCCAGACGCAATGCTGATGTCTTCCTCAAGTATTTACACAGAAACAGCGTGAACATGCCAGGAATGCTTGCACATGTCAAAGCCCCAGAACAACAAGTCAAAAACATCCTGAATGAGCTGCTACAGCGAGAGAACCGGGTTCTGCACTTCTGGACCATGAGGAAGAGGAGGCTTGACCAGTGTCAGCAGTATGTGGTGTTTGAGCGCAGCGCCAAACAGGCTTTGGAGTGGATCCATGACACAGGAGAGTTTTACCTGTCCACACACACCTCCACGGGCTCCACTATACACCACACACAGGAACTGCTGAAAGAACATGAGGAATTCCAGATTACAGCCAAGcAAACCAAAGAGCGGGTGAAGTTGTTGATCCAGCTGGCTGATGGTTTTTGTGAGAAGGGCCACGCCCATGCCAGCGAGATTCAGAAATGGGTCGCGTCCGTGGACAAACGCTACCGTGACTTTTCCCTCCGCATGGACAAGTACCGATCCTGCCTGGAGAAAGCGCTCGGCCTGTCCACTGACTCCAACAAAGCGAGTAAAGATCTGCAGTTGGACATTATTCCAGCCAGTGCTCCTGGAGCAGAGGTCAAACTCAGAGATGTCAACCACGAACTGAATGAAGAGAAACGCAAATCAGCTCGCAGAAAAGAgtTTATAATGGCAGAGCTCATTCAGACTGAGAAGGCATATGTGCGAGATCTGCGGGAGTGTATGGATacTTATCTTTGGGAGATGAGCAGTGGCGTGGAGGAGATTCCCCCAGGGATTGTCAACAAAGAGCACATCATTTTTGGCAACATGCAAGATCTATACGAGTTCCATCACAACATTTTCCTTAAAGAACTGGAAAAATATGAGCAGCTTCCAGAGGATGTGGGTCACTGTTTTGTCACATGGGCGGACAAATTTCAGATGTATGTGAATTACTGTAAGAATAAGCCTGACTCAACTCAGCTGATTCTGGAACACGCAGGGCCCTATTTTGATGAAATCCAGCAGAGGCACAGGCTGGCCAATTCCATCTCATCGTACCTTATTAAACCGGTTCAGAGGATCACCAAGTATCAGCTGCTGCTGAAGgAACTATTGACGTGTTGTGAGGAGGGTAAAGGAGAAATTAAAGATGGCCTGGAGGTCATGTTAAGCGTACCCAAACGAGCTAACGATGCTATGCACCTTAGCATGCTAGAAGGTTTCGATGAGAACATTGAGTCTCAGGGTGAGCTGATTCTGCAGGAATCATTCCAGGTTTGGGATCCAAAGACTCTGATCCGTAAGGGCAGAGAGCGACACCTCTTCCTCTTTGAAATGTCCCTCATCTTCAGCAAGGACGTCAAAGATTCCAATGGCAGGAGCAAGTACctctacaagagcaagctcatgACCTCAGAACTAGGAGTTACTGAACATGTTGAAGGGGATCCATGTAAATTTGCACTCTGGGTTGGACGGACACCTACTTCAGACAACAAAATAGTCCTAAAGAAGCAGTCGACCCTGGGCTACAATTTTACCCTGAACAAACATAGCACAGAGATCACTAGAATGCTTAGATTAaaagcaaaaacacacaaacaCATTAATTTGCCTCCTGCTCCTTTAAATCTTGGCACATTGTGTCCGTCTCTGCCTCCTCTCTCTTCTTCCTGCCAGGCGTCACTCCTTCAGACAGATTCCATCTCCGTGGCAATGCGAGGATGTGTCAGTTCACTTTGGTCACTTTCGTTGTCTGGTGGTTCGGAGTTGACGGTGGTCATCCACGACTTCATGGCCAGTAATGGAGCTGAGTTGACTGTACGTCGAGGTCAGACGGTGGAGCTGTTAGAAAGGCCCCAGGACAAGCCCGACTGGTGTTTGGTTCGCACCACTGACCGCTCACCTGCCCAGGAGGGCCTCGTTCCAAGCGCAATGCTTTGCATCGACCATTCACGCAGCAGTATGGAGATGGAGGGAATTTTCAATCATAAAGACACGCTCTCAGTGTCCAGCAATGAAGGAGGAATTTCAGGCAGTGCCACTCTTCAGCCGAGTCACTTACAGAGCTCTCCTGGACCCAAACGGCCTGGAAATACTCTGCGCAAGTGGCTGACGAGCCCCGTCAGGCGGCTCAGCAGCGGCAAAGCAGATGGTCATGTAAAGAAACTCGCACACAAGCACAAGAAGAGTCGAGATGTCCGCAAGAATGCAGATGGCGGCTCACAGAAAGACTCAGATGACAGCGCCGCCACTCCACAAGATGAGACCATCGAAGAGAGGATGAGGAACGAAGGATTGAGCAGTGGCACTCTCTCCAAGTCTTCCTCCTCTGGGATGCAGAGCTGTGGTGAGGAAGAGGGGGAGGAAGGCCCAGACTCTGTTCCTCTGCCGCCCCCTATGGCCATCCAGCAGCACAGCCTTCTGCATCAAGACTCCCAGGAGGACAAGGTAAAAGCTGCTCGTTTATCTGGACGTCCTAGCAGCTCAGAGACACCAAGTGCAGCTGAACTGGTCAGCGCCATTGAGGAACTAGTCAAGAGTAAAATGAATCTGGAGGACAGGCCCAGCTCTCTCCCTGTTGAACACAGAGACAGCACTAGTCCTTCCTGCAACCCGTCGGATAACTCCCTCTTGTCTTCCTCTTCTCCCATCGATGAGATGGATGAACGCAAGACTGGCTTCCTCAAGAGACGACACTACGTCCTGCTGGAACTGGTGGAAACAGAAAGAGACTATGTGAGAGACCTTGGTGCAGTCGTGGAGGGCTACATGAGCAGGATGAAGGAGGAGGGTGTACCCGATGACATGAAGGGCAAGGATAAGATTGTCTTTGGGAACATTCACCAGATATTCGACTGGCATAAAGATTTCTTTCTTGCTGAGCTGGAGAAGTGCTTGGAGGACCCCGATAGACTCGCACCCCTGTTTGTCAGACAGGAACGTAGACTACACATGTACATCGTGTACTGCCAAAACAAGCCCAAATCTGAGCACATTGTTTCGGAGTACATAGACACGTATTTTGAGGATTTAAAGCAGAGGTTGGGCCACAGGCTACAGATCACAGATCTACTGATTAAACCAGTGCAGCGGATCATGAAATACCAGCTTCTGCTAAAGGATTTACTCAAGTTCACCAAAAAGGCTGGGTTGGACACTGTAGATTTAgagAAAGCGGTGGAGGTGATGTGTGTTGTTCCTAAGCGCTGCAATGACATGATGAATGTTGGACGCCTCCAAGGGTTTGATGGTAAAATTGTAGCCCAGGGTCGACTGCTTCTTCAGGATACCTTCATGGTCTCAGATCAGGATGGTGGTCTTCTTTCTCGCTTGAAGGAGAGACGCATCTTCCTCTTCGAGCAGATAGTTATCTTCAGCGAGCCTCTGGATAAAAAGAAGGGATTTTCTATGCCAGGCTACCTTTTTAAGAACAGCATAAAGGTCAGTTGGCTGGGTCTAGAGGAAAGTCCTGACAATGACCCTTGTAAGTTTATTTTGACCTCAAGGTCATCGGCTGGCAGTTTAGAGCATTACGTCCTCCATTCCTCCAACCGGGTGGTTTGCCAGACCTGGATCCACCAGATCAGCAGCATCCTGGAGAACCAGAGAAACTTCCTTAATGCACTGACTTCACCCATTGAATACCAACGGAATCATGTTGGCTCAAGCGGCCTGGCCGGACCCAGCAGCAGTGGACTTCCAGGGGGAAGCAGCAGCTCCTCGATGGGTCCTGGTTGTGGCTCCCGGTCACGAGCTTCTCGAATCCCTCAACCTTCCTCTCGTCTCCCCCAACCCGTGCAGCATCACCATGCCCCCGCCCCAGATGACCGCACTTCAGGTACGTGCCCTCCTCCTATTAAGGACCTAAACGGTGAGGTCCCTAGGATGCGGGTACTGGAGAGCCCATTGAAGGAGCTGCGTGAGGAAGCCCAATCAGGGATGCCCATTCCAAGAGCGACAGTCGCACCCCTGTCTCTCACCCTAACAAAACCCCGTCTCAGAGCCCCCTCGCCCATCCTCCCCTCCTTGAACCCTCAGAACTTTACTACCTTCGCACCGAGCATGCCAGCCCAGAAGGGCTCTGCATTTTGGGCGTGTATGCCAGCCTCACCGACTGGCAGGCCTGGCTCATACACAGAGCAGAGTGACACGTTAAGTCGCAACCAGTTTCAAACACGCAGGCACTCCGCCCACAGTAAAGAGTTGGACCGCATCAGTACTTGCTCTTCTACCAGTGAGCAGTCCCTGCACTCCACTTACAGTAATGGGagtgaaagcagcagcagcagcagtgtgtccaccatgttggtgacccagGACTACGTGGCTCTAAAGGAGGATGAGATCAGCGTATATCAAGGAGAAGTTGTGCAGATATTGGCGTCTAACCAGCAGAACATGTTTCTAGTATTCCGTGCCGCCACAGAACAAGGCCCAGCAGCTGAGGGCTGGATCCCCGGCTACGTTCTGGGTCACACCTCCATCATCATTCCCGACTACCCTGATGGAACCCTCAAGAAGTCTACATCATGGCACACAGCTTTACGCATTCGACGGAAGTCCGAAAAGAGAGACAAAGAGGGCAGAAAGGAAAGCAAAGCAGAAAATGGCTTTCGCAAGTCTAGAGATGGACCAGCAAATAAGGTTTCCGTAAAGCTTCTGAATCCCAACTACATTTATGATGCAGTTCCCCCAGAGTTTGTGGTCCCGCTTGCGGAGGCCGTGTGTGACAGAGGTGACAGTGTGACACTCCGCTGTAAGATCTGTGGGCAGCCCAAAGCCTCGGTCTGCTGGAGAGGGCCTGACCAGAGCACTCTCAGCAGCGGTGGAagatacactctcacacacagTGAGACAGGAGAGGTCACCCTCCGTATCTCCACTGCCACTCTGGAGGACAGCGGCACATACACCTGCATCGCCTCAAATGACGTGGGCTCAGTGACATCATCAGCCTACCTCAGAGTGCTCGGCACATCCTGTGACGGAATTCTCTGGAAGGATAACTTTGAGTCTCTCTACACTGAAGTTATGGAGCTTGGGAGAGGCAGGTTTGCCGTCACTAAGTGGTGTGAGCAGAGAGGAAGCAGGCGATCTGTGGCCGCAAAGCTCGTCAACAAGAAGCTAATGCGTCGAGAGCAGGTGGTTCAGGAGCTGGGGGTTTTACAGTGTCTTCAGCACCCTCACCTAGTGGGCTTGCTGGACACCTACGAGACCCCAGCCAGCTATGTTCTCATCCTGGAGATcGCTGATCAAGGTCGTATCCTGGACTATATTGTTAGCTGGGGGAACTTGACTGAAGAAAAGGTGTCTCTTTACCTACGGGATGTTCTAGAAGCTTTACACTACCTTCACGCATGCAGGATTGCTCATCTTGACTTGAAGCCTGAGAATGTATTAATCGAGCAAACGTCAGCCAAGCCTCTAGTCAAACTGGCGGACTTTGGCGACGCGGCGCATCTCTCCAACACCCCTTACATCCACCCTCTGCTGGGCAGCCCTGAGTTCTCGGCCCCAGAGCTGGTGTTGGGTGAGCCCGCAGCTCTGGCGTCTGACCTCTGGAGTTTAGGCGTGTTGGCGTACGTAATGCTCAGCGGCGCGTCTCCGTTCCTGGACGAAAGTGTGGAGGAGACCTGCCTCAACATCTGCCGCATTGACTTCAGCTTCCCGGAGGACTACTTCCACGGCGTGAGTCAGGCGGCGCGGGACTTTATATGCATGTTACTCCAAGGTGAGCCATGTAGACGTCCCTCTGCACAGGTTTGCCTTCACGAGGAGTTCTGGCTACAGCCTGACACCACCTCCAGCGCAGCTCGCCTTGACACTTCCAGACTTATCTCTTTTATAGAGCGGAGGAAACATCAGAACGATTTACGCCCCGTCGCCAGTTTCCAAGCATTTCTGCGTAGTCGCCTTCTCAGTCAGACCTGA

Function

symbol description
triob Predicted to enable ATP binding activity; guanyl-nucleotide exchange factor activity; and protein serine/threonine kinase activity. Predicted to act upstream of or within axon guidance; central nervous system development; and protein phosphorylation. Predicted to be located in cytoplasm. Human ortholog(s) of this gene implicated in autosomal dominant non-syndromic intellectual disability and autosomal dominant non-syndromic intellectual disability 44. Orthologous to human TRIO (trio Rho guanine nucleotide exchange factor).

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0007411 axon guidance biological_process
GO:0007417 central nervous system development biological_process
GO:0016310 phosphorylation biological_process
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030616-399 Predicted to enable ATP binding activity; guanyl-nucleotide exchange factor activity; and protein serine/threonine kinase activity. Predicted to act upstream of or within axon guidance; central nervous system development; and protein phosphorylation. Predicted to be located in cytoplasm. Human ortholog(s) of this gene implicated in autosomal dominant non-syndromic intellectual disability and autosomal dominant non-syndromic intellectual disability 44. Orthologous to human TRIO (trio Rho guanine nucleotide exchange factor).

Ensembl:

ensembl_id ENSDARG00000000370

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020532 True 8958 mRNA 0.52 57 8751815 8927425

Neighbor

gene id symbol gene type direction distance location
XLOC_010452 NA coding downstream 72353 8668981 ~ 8679462 (-)
XLOC_010451 cobl coding downstream 88263 8529772 ~ 8663552 (-)
XLOC_010449 grb10b coding downstream 231341 8364085 ~ 8520474 (-)
XLOC_010450 CU062417.1 coding downstream 272806 8478880 ~ 8479009 (-)
XLOC_010448 ddc coding downstream 409066 8298542 ~ 8342749 (-)
XLOC_010454 adcy2a coding upstream 348264 9275689 ~ 9383629 (-)
XLOC_010455 CR394537.1 coding upstream 374654 9302079 ~ 9302194 (-)
XLOC_010456 ccr8.1 coding upstream 493577 9421002 ~ 9425451 (-)
XLOC_010457 prpf3 coding upstream 506313 9433738 ~ 9453591 (-)
XLOC_010458 FO704756.1 coding upstream 637078 9564503 ~ 9566371 (-)
XLOC_010626 CR392024.2 misc upstream 11967687 20895112 ~ 20895175 (-)
XLOC_010447 CR478208.1 non-coding downstream 463368 8287771 ~ 8288447 (-)
XLOC_010444 NA non-coding downstream 609503 8140712 ~ 8142312 (-)
XLOC_010442 CU856516.1 non-coding downstream 766914 7968020 ~ 7984901 (-)
XLOC_010461 NA non-coding upstream 831751 9759176 ~ 9761753 (-)
XLOC_010466 NA non-coding upstream 1085560 10012985 ~ 10013605 (-)
XLOC_010472 NA non-coding upstream 1493745 10421170 ~ 10429893 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000016_11353238_11464979 TRIO, TRIOB coding CI01000016 null 11352733 ~ 11464979 (-)