XLOC_010460 (COLEC10)


Basic Information

Item Value
gene id XLOC_010460
gene name COLEC10
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 9680908 ~ 9694822 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020543
GTAAACATGTGGTAAACTCCCTTCTCACTCTCCTCTTGAGAACAAGTTTCAAAGTTTCTAATGTAAGTCATGGATGGACATATCTTCAGCAGGAGACTGTTTCTATGCTTATTTCTTTGTTATGTCTACCCTCATTGTTCAACAAACGAAGTCTGCTCAAACAATATACATCCTGGAACAAAAGGTGATCCAGGTGAGGAGGGAGCAGAAGGTGAAGAGGGAATAATGGGGAAATCCGGCCCATCTGGCAAGCAAGgCCTCCCTGGTAAATATGGAGACAAAGGACTGATTGGCCAAATAGGAAAGAGAGGACCTAGAGGAATGAGAGGTGACAAGGGACAACAAGGAACTGATGGAATCCAAGGGTTAAAAGGAAAACCTGGTTCAGTTTGTGATTGTGGGAAGTACAGAAAAGTGATTGGACAGATGGACGCCAGTATAAGCAAAGTGAAAAACGCCATCAAGTTTATAAAGAAAGTGGTTCTAGGTATCAGGGAGACTGAGAACATGTTTTACCTGCTTGTTACGGAAGCGCGGACGTATCAACAGTCACTTTTGAACTGCAAGTTGCGTGGTGGGACTCTTGCTATGTCCAGGACCGAAGAGAAAAACAACTTGTTGGCCAACTTTATCAAAGAGGCTGATCTTAATCACGTGTTTATAAGATTACAGGCAGGGGTAACAGAGGTGGGGTACATGTACTTGAATGGTAACCCTCTCTTAAATACCACAGCTTGGGCAATTCAGGGGGCAGACAGTGGTAAAGGTGACTGTGTGCAGCTTGGTAGAACAGGAGCCTTGAGCCAGGTAGACTGTGGAGCCACACAGTACTATATATGTGAGTTTGTAAAAAACAATGACACTACAAAAAATTCAATCGTGTGATGATTCATAGGTCATAGTGGAAacccttaattattattattgttgtttacaataataataataataaaaataaaaacattaataaggtgacactttacaataaggtttgaTTAGCTAATGTTAGTtatgtatttactagcatgaagTAAGAATGAATAATACTTGTACAGAAATGAAgcatatttaatgttattttcaaccatattaaatgttttattaaaatccaaatgtgTGCCTGTTAATGTAAGCTAATGTACTTAAAACAATGACTAAAGTCCTTAAAACAAGAACTAACagtaaacaactgtattttcattacacagaaattgtacattttttatgttaagcTGTATACACGATTAGTGTTTTaccttttgttgtttttattgatatattattgtgtacagtattattattatacactacTGATTAGACTGAAATTATTGTAGATTTTACAGTTTTTGTAAGTGTCAGATCCTAAATAAAATTCT

Function

symbol description
colec10 Human ortholog(s) of this gene implicated in 3MC syndrome 3. Orthologous to human COLEC10 (collectin subfamily member 10).

GO: NA

KEGG:

id description
ko04091 Lectins

ZFIN:

id description
ZDB-GENE-131127-525 Human ortholog(s) of this gene implicated in 3MC syndrome 3. Orthologous to human COLEC10 (collectin subfamily member 10).

Ensembl:

ensembl_id ENSDARG00000104752

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020543 True 1376 mRNA 0.37 6 9680908 9694822

Neighbor

gene id symbol gene type direction distance location
XLOC_010459 mal2 coding downstream 4926 9672126 ~ 9675982 (-)
XLOC_010458 FO704756.1 coding downstream 114537 9564503 ~ 9566371 (-)
XLOC_010457 prpf3 coding downstream 227317 9433738 ~ 9453591 (-)
XLOC_010456 ccr8.1 coding downstream 255457 9421002 ~ 9425451 (-)
XLOC_010454 adcy2a coding downstream 297279 9275689 ~ 9383629 (-)
XLOC_010461 NA coding upstream 64354 9759176 ~ 9761753 (-)
XLOC_010462 tapbpl coding upstream 92561 9787383 ~ 9802998 (-)
XLOC_010463 grhl2a coding upstream 112441 9807263 ~ 9830451 (-)
XLOC_010464 ncalda coding upstream 138434 9833256 ~ 9897769 (-)
XLOC_010465 id4 coding upstream 283036 9977858 ~ 9980402 (-)
XLOC_010626 CR392024.2 misc upstream 11200290 20895112 ~ 20895175 (-)
XLOC_010455 CR394537.1 non-coding downstream 378714 9302079 ~ 9302194 (-)
XLOC_010452 NA non-coding downstream 1001446 8668981 ~ 8679462 (-)
XLOC_010450 CU062417.1 non-coding downstream 1201899 8478880 ~ 8479009 (-)
XLOC_010447 CR478208.1 non-coding downstream 1392461 8287771 ~ 8288447 (-)
XLOC_010466 NA non-coding upstream 318163 10012985 ~ 10013605 (-)
XLOC_010472 NA non-coding upstream 726348 10421170 ~ 10429893 (-)
XLOC_010473 NA non-coding upstream 730925 10425747 ~ 10428540 (-)
XLOC_010477 NA non-coding upstream 1154884 10849706 ~ 10859614 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000233_00043882_00045626 NA coding CI01000233 null 43700 ~ 45626 (-)