XLOC_010465 (id4)


Basic Information

Item Value
gene id XLOC_010465
gene name id4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 9977858 ~ 9980402 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020551
TTTTCCTCTGTGTGACCAACAATAACTCATCCGCTGTTTTGCACTGTGCGTTCACACTCAGAGAGGAGATGTGGTCAGGATAGATCTGCGCTCTTTTTCTTCGTGCACCAtactacgttttttttttactaaacgtaTTGTTGCgtccgtgtttttttttttcctttttcacgTTTTtctttttgtagttttatttattacaatgaaGGCCAGCGTGCCGGTTCGCCCTCATAAGCTTCCTTCTAGCTGCAGTCAGCTCTCCTTGCGTTATTTGTCGGAGAGCAGCCGATGCAAAATGGAAGATGAGGATCTTTTCTGTCTGCAGTACGACATGAACGACTGCTACAGCCGACTCAAACGCTTGGTGCCCACTATTCCGCAGGATAAGAAAGTCAGTAAAGTGGAAATCCTCCAGCATGTCATTGACTATATTCTGGACCTGCAGCTGGCGTTGGAAACGCACCCTGCGCTCCTGAAACAGACGAGCCCACCCGCTTCCACACGGACTCCACTCACACAAATCAACACAGAGCAGAGGACAACGGGTGTCAATAAGGAAGACTCACTTTTTTTGTGTCGCTGAAATTTTGCACACCGGTGCGCAAATGAACCCATCCAAAGCCAAGCCCAGCTTCACCAGGGAATGCAACACACATCTGGCCAATTACAGTGGAGCAGGACTGAAACtaatatctaaataaaataaataaatcacaatttgtaaacattttgtgGTCAACTATCAAACATGCGATGATGCCAGTCCGATTTCTCATGTGGATTTGGACAGAGAATCTGTTCCCACACCATCTTTTTCTTTGGTATTTCTTTTTGAAGGCacctaagtaaaaaaaaaaaaaagaacctggGTGTAAATTTACAGTCTCTAAAGCTTTactaaagaaaatgaaaatgtaaacatCTGACATATATTGTTAGGTGACGTGTGTTGACCAGGGATTTCCCTGCTGTTTAATATTGTACAAAGCTATACGTGTTGACTTGATGATGTACATAACATGCGCGATGTTCTATAACTGTATGTGTAAGAGAATATATGTTCAACCAGCCGATTTTAAtcattctaaaatattttttatcaaaaatgttttgttctgtaaataCTGTGTTTTCACATTAATGTAGTGAATGATTACATTATGTTCTGTGAATAAAGTCCTCacatcttaa

Function

symbol description
id4 Predicted to enable protein dimerization activity. Acts upstream of or within atrioventricular canal development; atrioventricular valve development; and regulation of Wnt signaling pathway involved in heart development. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Is expressed in central nervous system; heart; and retina. Orthologous to human ID4 (inhibitor of DNA binding 4, HLH protein).

GO:

id name namespace
GO:0036302 atrioventricular canal development biological_process
GO:0030154 cell differentiation biological_process
GO:0032922 circadian regulation of gene expression biological_process
GO:0003171 atrioventricular valve development biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0003307 regulation of Wnt signaling pathway involved in heart development biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0140110 transcription regulator activity molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
ko04350 TGF-beta signaling pathway
ko04550 Signaling pathways regulating pluripotency of stem cells
ko03000 Transcription factors

ZFIN:

id description
ZDB-GENE-051113-208 Predicted to enable protein dimerization activity. Acts upstream of or within atrioventricular canal development; atrioventricular valve development; and regulation of Wnt signaling pathway involved in heart development. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Is expressed in central nervous system; heart; and retina. Orthologous to human ID4 (inhibitor of DNA binding 4, HLH protein).

Ensembl:

ensembl_id ENSDARG00000045131

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020551 True 1191 mRNA 0.40 3 9977858 9980402

Neighbor

gene id symbol gene type direction distance location
XLOC_010464 ncalda coding downstream 80089 9833256 ~ 9897769 (-)
XLOC_010463 grhl2a coding downstream 147407 9807263 ~ 9830451 (-)
XLOC_010462 tapbpl coding downstream 174860 9787383 ~ 9802998 (-)
XLOC_010461 NA coding downstream 216105 9759176 ~ 9761753 (-)
XLOC_010460 COLEC10 coding downstream 283036 9680908 ~ 9694822 (-)
XLOC_010466 NA coding upstream 32583 10012985 ~ 10013605 (-)
XLOC_010467 cep76 coding upstream 45494 10025896 ~ 10053049 (-)
XLOC_010468 ptpn2a coding upstream 75090 10055492 ~ 10071887 (-)
XLOC_010469 cep192 coding upstream 116720 10097122 ~ 10261652 (-)
XLOC_010470 flot1b coding upstream 307186 10287588 ~ 10316359 (-)
XLOC_010626 CR392024.2 misc upstream 10914710 20895112 ~ 20895175 (-)
XLOC_010458 FO704756.1 non-coding downstream 411487 9564503 ~ 9566371 (-)
XLOC_010455 CR394537.1 non-coding downstream 675664 9302079 ~ 9302194 (-)
XLOC_010452 NA non-coding downstream 1298396 8668981 ~ 8679462 (-)
XLOC_010450 CU062417.1 non-coding downstream 1498849 8478880 ~ 8479009 (-)
XLOC_010472 NA non-coding upstream 440768 10421170 ~ 10429893 (-)
XLOC_010473 NA non-coding upstream 445345 10425747 ~ 10428540 (-)
XLOC_010477 NA non-coding upstream 869304 10849706 ~ 10859614 (-)
XLOC_010478 CU468227.1 non-coding upstream 935888 10916290 ~ 10916404 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G98896 NA unknown CI01000016 null 9511357 ~ 9511415 (-)