XLOC_010468 (ptpn2a)


Basic Information

Item Value
gene id XLOC_010468
gene name ptpn2a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 10055492 ~ 10071887 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020553
AAAGGATGCAAGCTGCCGGTAaaatcagaagaagaagaaaaagaggaaaaCATTGCGTAACACCGTTTCTCTTTGTTTTCTCCAGAGAGTTATGTCAATTTCAAACAATGGAATAGCAATAACTCATTTGATATGAGACAACAATTGATTTACCCGCTTACGTGTGAATGATCTctctttagaaaataaaaatggaCCAGGAGTTTAAGAACATCGATTCATCTGGAGAGTGGCAAAACCTTTATAATGAATTACATAATCAGTCTCAAGAGCGGTCCTACAAAGTGGCAAAGTTCCCAGAAAACTGCAATAGGAATAGATATAGAGACGTCAGTCCTTATGATCACAGTCGGGTGAAATTAGAGAATTCTGAGAACGACTACATAAATGCCAGCTTAATTACCATGGAGGAGGCTCAAAGAAGGTACATATTGACACagGGTCCCTTGAAGAACACTTGCGGTCACTTCTGGCTAATGGTTTGGGAACAGGGTTCCAAAGCAGTTATTATGCTTAACAGAGTGATAGAGAAAGGCACGGAGAAATGTGCACAGTACTGGCCGTCAAAAGAGGAGCAAGACATGAATTTCAGTGACACTGGGTTCATGGTGACTCTTGTGTGTGAGGATGTTAAACCAAATTACACAATAAGACTATTAGAACTTCAAAATGGCAAGACAGGAGAGACCAGAGATATCTACCATTTTCATTACACAGCATGGCCTGATTTTGGTGTACCAGAGTCCCCAGCATCCTTCCTTGACTTTCTTTTCAAGGTCCGTGAGTCTGGGTCATTAGGGCCTGAGAATGGACCTGTGGTGGTCCACTGCAGTGCAGGAATAGGGCGATCTGGATCTTTCTCATTGGTTGACACCTGCCTTGTCTTGatGGACCAGAGAAATGACTTTTTGGCTGTGGACATACAAAAGGTTTTGTTAGACATGAGAGAGTATCGAATGGGCCTTATTCAAACCCCGGATCAACTTCGGTTTTCATATATGGCAGTCATGGAGGGAGCTAAGCTTATTCTGGGAGACTCTACTTTACAGAGCTCGATCTTGAGTCCTGAGAATTACATTGGAGAATCTGACCGTATGGAACCACAGGATTCAGGACTAGAGCAAGAATGGAAACGATTTCCAAAGGAAGAGCAGCTTAGTGAGTTAAAAACATTCAGTCTACGAAAGAGGAGCCGCAAGGAGCGGATAGCCAACACAGCACAGCAAGTGCAGAAAATGAAGATGAAATTGAGTGAttcagagaaaaagagagaaaactgGCTGTTCTGGAGACCAATTCTACTTAATGTCGGCGCTGGCGCAGCTGTGGCATTTGGACTTTGCATATGCTGGGCCTTTTTAACCCAGTAATTGTCCCGCAGatcatttttcctgtttttattttgtccagAGACACAAATTGTTTTCATGAAAGGTGCTTGGATGCTTCTAAATAAGGACTTATTTAAGAATGTTTACAAGCATTCATACCCAGATATTCTACATGTTTTATTGAATGTTCGTGTCATGTAgttattacagtgtaatgaatGTAGTTCAACTTTTGTAATACCGTCTTGGGAAGTTTTTGAGATCTGACAGTTTTCACTGTACAGTAATCTGCCTGCAGCATGGTGTTTAAAAGTAGTCTCCACTTGGTtttgattattgtatttatttgatgcTTTTGTCTTCAAATTTCCACTTGGAATATCATAGAGTGACTCATTTGTTTGTACAGGTTAAAGCTCAGCGAGTTTCTATTCATGTTTACAATTGAGGATCTTTTAGTAATAAACTGACTGTAGATTTACCCAAAA
>TCONS_00020554
CGTGAGTCTGGGTCATTAGGGCCTGAGAATGGACCTGTGGTGGTCCACTGCAGTGCAGGAATAGGGCGATCTGGATCTTTCTCATTGGTTGACACCTGCCTTGTCTTGatGGACCAGAGAAATGACTTTTTGGCTGTGGACATACAAAAGGTTTTGTTAGACATGAGAGAGTATCGAATGGGCCTTATTCAAACCCCGGATCAACTTCGGTTTTCATATATGGCAGTCATGGAGGGAGCTAAGCTTATTCTGGGAGACTCTACTTTACAGGTATCAAACATATGCTGCATTTGCACTTATTAtcacgtttttacaaaaattaaaacaaattttaaagcaCTGAATTGCCTTAAAGCACTACAatgatatatgtatattttttattttaaatctaccATAGAATGTAAATATGGATATACTTAGGGATTGCCTAATAATAAGAGCTAGGGTGCGAGTGTTTTTTCACCCAGTCTAGTGTTTCACTCACAttcaatacacacacatttttaaacatcccAAAAACTCTAATGATAACTGAAAGTGTGCCACTGTTTTGGTTAGTAGCGCCtgccatttaagttaaaaattcAAGGTAAGTTAAATAATTTGACTGAATTATTttagaataatttatattaactacaataagaagaacaaaaaaaatgtagatgGCATGTTAAAGTGGTTTCAATTTTAATTATGATATCTTTATGCCACCACAGAGTTGGGAcacaattacacctgaaacacttcattatttggtgtcttcagtccctaaatgtcttttaagtgttgtgaaaaggaatggcaacat
>TCONS_00020555
CAAAGGATGCAAGCTGCCGGTAaaatcagaagaagaagaaaaagaggaaaaCATTGCGTAACACCGTTTCTCTTTGTTTTCTCCAGAGAaaaataaaaatggaCCAGGAGTTTAAGAACATCGATTCATCTGGAGAGTGGCAAAACCTTTATAATGAATTACATAATCAGTCTCAAGAGCGGTCCTACAAAGTGGCAAAGTTCCCAGAAAACTGCAATAGGAATAGATATAGAGACGTCAGTCCTTATGATCACAGTCGGGTGAAATTAGAGAATTCTGAGAACGACTACATAAATGCCAGCTTAATTACCATGGAGGAGGCTCAAAGAAGGTACATATTGACACagGGTCCCTTGAAGAACACTTGCGGTCACTTCTGGCTAATGGTTTGGGAACAGGGTTCCAAAGCAGTTATTATGCTTAACAGAGTGATAGAGAAAGGCACGGAGAAATGTGCACAGTACTGGCCGTCAAAAGAGGAGCAAGACATGAATTTCAGTGACACTGGGTTCATGGTGACTCTTGTGTGTGAGGATGTTAAACCAAATTACACAATAAGACTATTAGAACTTCAAAATGGCAAGACAGGAGAGACCAGAGATATCTACCATTTTCATTACACAGCATGGCCTGATTTTGGTGTACCAGAGTCCCCAGCATCCTTCCTTGACTTTCTTTTCAAGGTCCGTGAGTCTGGGTCATTAGGGCCTGAGAATGGACCTGTGGTGGTCCACTGCAGTGCAGGAATAGGGCGATCTGGATCTTTCTCATTGGTTGACACCTGCCTTGTCTTGatGGACCAGAGAAATGACTTTTTGGCTGTGGACATACAAAAGGTTTTGTTAGACATGAGAGAGTATCGAATGGGCCTTATTCAAACCCCGGATCAACTTCGGTTTTCATATATGGCAGTC

Function

symbol description
ptpn2a Predicted to enable protein tyrosine phosphatase activity. Predicted to act upstream of or within protein dephosphorylation. Predicted to be located in endoplasmic reticulum. Orthologous to human PTPN2 (protein tyrosine phosphatase non-receptor type 2).

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0016311 dephosphorylation biological_process
GO:0016787 hydrolase activity molecular_function
GO:0016791 phosphatase activity molecular_function
GO:0004721 phosphoprotein phosphatase activity molecular_function
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1196 Predicted to enable protein tyrosine phosphatase activity. Predicted to act upstream of or within protein dephosphorylation. Predicted to be located in endoplasmic reticulum. Orthologous to human PTPN2 (protein tyrosine phosphatase non-receptor type 2).

Ensembl:

ensembl_id ENSDARG00000016481

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020553 False 1819 mRNA 0.40 9 10055492 10071886
TCONS_00020554 False 814 lncRNA 0.36 2 10064926 10065880
TCONS_00020555 True 914 mRNA 0.43 8 10065512 10071887

Neighbor

gene id symbol gene type direction distance location
XLOC_010467 cep76 coding downstream 2443 10025896 ~ 10053049 (-)
XLOC_010466 NA coding downstream 41887 10012985 ~ 10013605 (-)
XLOC_010465 id4 coding downstream 75090 9977858 ~ 9980402 (-)
XLOC_010464 ncalda coding downstream 157723 9833256 ~ 9897769 (-)
XLOC_010463 grhl2a coding downstream 225041 9807263 ~ 9830451 (-)
XLOC_010469 cep192 coding upstream 25235 10097122 ~ 10261652 (-)
XLOC_010470 flot1b coding upstream 215701 10287588 ~ 10316359 (-)
XLOC_010471 si:ch73-54f23.4 coding upstream 325553 10397440 ~ 10404383 (-)
XLOC_010472 NA coding upstream 349283 10421170 ~ 10429893 (-)
XLOC_010473 NA coding upstream 353860 10425747 ~ 10428540 (-)
XLOC_010626 CR392024.2 misc upstream 10823225 20895112 ~ 20895175 (-)
XLOC_010461 NA non-coding downstream 293739 9759176 ~ 9761753 (-)
XLOC_010458 FO704756.1 non-coding downstream 489121 9564503 ~ 9566371 (-)
XLOC_010455 CR394537.1 non-coding downstream 753298 9302079 ~ 9302194 (-)
XLOC_010452 NA non-coding downstream 1376030 8668981 ~ 8679462 (-)
XLOC_010477 NA non-coding upstream 777819 10849706 ~ 10859614 (-)
XLOC_010478 CU468227.1 non-coding upstream 844403 10916290 ~ 10916404 (-)
XLOC_010479 NA non-coding upstream 845697 10917584 ~ 10919434 (-)

Expression


Co-expression Network