XLOC_010471 (si:ch73-54f23.4)


Basic Information

Item Value
gene id XLOC_010471
gene name si:ch73-54f23.4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 10397440 ~ 10404383 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020561
tattCAGCCTGGCATAAATATAACACTACTCAACCCTACCTTACTTTGActgctatctctctctctttttctctctctcactaaATCCACCCCACCCCcttctttgtgtgtgtttctaaTACACACCTATCAGTCAGTTTGATTTAACCCCTCTCTCACACATGTATGAGATCTCAGAGTTCTGACTGCTTTGTTCTGACAAGCAAAACTGGAATGCACACAAATCACATGAAGGACACAAACAACAACTTTAACAACTCTCTCCTCGGCGCCCAAAAGGAGAAACTTATTCAAGcgattaaaaaaatcaaacatgaaaTTGATGAATGTTATGAAGCTGAGAAAGATGCCTTTGTGGACGCACTGGAAGTCGAGAACAGATTTGAAAAGATTGAGCGTGAAATCCGAGCAGAATTTCAAAACCTCCATCGTTTCCTGAACGAGGAGGAGGAGGCAGATGTGGAGCGACTGAAGAAGGAGAGAGACAAACGAGTGAAGATCTTAAAAGACAGAGAGAAGAAGATTGCCATGCAGGGTGGAGCTCTAGAGAAAGCCATCGAGACGCTGAACTGCAAACTGCGAGAAGACGACAGTCCCAAACTTCTGAAGgaAATCAAAGAGCTTCTCAAAAGATGTGAGGTGAATTTTGTTCGTCCTTCCCCAATCGACAGTGAAATCTTCTCGAGTCAGTTTGTGGGGCCCATTCAGTACCGGATCTGGAAACACATGAAGGCATCACTATACCCAAACATATCCATGTTGACGTTTGACCCTGAAACAGCACATCCCCTTCTGACCTTGTCTCCTGAGAGAACTGCAGTGACTTTCGAGGAGGGCAAGGAGCCTGGGGAGAATCTGGCTGAGCGGAACCCAAAGCGCTTCCACTACTATTACTGCGTAATGGGCTCAGAGGGCTTCACTCATGGCCGCCATTACTGGGAGGTGGAGGTAAAAGGCAAGACCGCCTGGAGAGTGGGTGTGGCGAGAGCAGACGTGCACCGCGGAGAGATGGACTCTTCCTCGACGCTAAACGGACTGTGGACGTTGTCTCTTAGAAATGGCTCGATCACGGCCTGCACCCACCCAAAGCCCACACCAGTGCTCTCGTACACTCCCCCAATCCGCATCGGCGTTTTCCTAGACTGTGATAATGAGGAGGTGTCTTTCTACAACGCTGTCACCATGAACCCACTCTTCTCCTTCTACACAGGGACTGTTTTAGTGCCACTCTATCCATTCTATAACCCGTGTGACACAGATGAAGGAAAGAACTGTGCTCCTCTTTCCATATTTCATCCATCACTGTGAAGGATTGGCTTGGGTGTTTGTTTCTTCAACTAACTGCTGACACAGTTTGAAATGCTGGATTTTGATCAACCGAAAGCATGAATGCCTGTGAATCTAGATTGCAGGGGTCTTATTTATGAATGTGgcatacacataaaaaaacagaaGTGGAAGCGTTCGTACGGCACTTTCACGCAAAGGTTGTAATCTATAAAAAACTAACTTGACAGAGAATGTGCGCAGGTGTAAGTAAATGTTTTTTACTTAAATACTGACTTAATTGAACCACCTTAAATCATTATATAAGCcataatcataaatatataaCTACAAATTTAT

Function

symbol description
si:ch73-54f23.4 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination. Predicted to be active in cytoplasm.

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0005737 cytoplasm cellular_component
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-160113-43 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination. Predicted to be active in cytoplasm.

Ensembl:

ensembl_id ENSDARG00000105460

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020561 True 1626 mRNA 0.45 6 10397440 10404383

Neighbor

gene id symbol gene type direction distance location
XLOC_010470 flot1b coding downstream 81081 10287588 ~ 10316359 (-)
XLOC_010469 cep192 coding downstream 135788 10097122 ~ 10261652 (-)
XLOC_010468 ptpn2a coding downstream 325553 10055492 ~ 10071887 (-)
XLOC_010467 cep76 coding downstream 344391 10025896 ~ 10053049 (-)
XLOC_010466 NA coding downstream 383835 10012985 ~ 10013605 (-)
XLOC_010472 NA coding upstream 16787 10421170 ~ 10429893 (-)
XLOC_010473 NA coding upstream 21364 10425747 ~ 10428540 (-)
XLOC_010474 abhd16a coding upstream 73150 10477533 ~ 10516970 (-)
XLOC_010475 g6fl coding upstream 118213 10522596 ~ 10547781 (-)
XLOC_010476 rabac1 coding upstream 424404 10828787 ~ 10837245 (-)
XLOC_010626 CR392024.2 misc upstream 10490729 20895112 ~ 20895175 (-)
XLOC_010461 NA non-coding downstream 635687 9759176 ~ 9761753 (-)
XLOC_010458 FO704756.1 non-coding downstream 831069 9564503 ~ 9566371 (-)
XLOC_010455 CR394537.1 non-coding downstream 1095246 9302079 ~ 9302194 (-)
XLOC_010452 NA non-coding downstream 1717978 8668981 ~ 8679462 (-)
XLOC_010477 NA non-coding upstream 445323 10849706 ~ 10859614 (-)
XLOC_010478 CU468227.1 non-coding upstream 511907 10916290 ~ 10916404 (-)
XLOC_010479 NA non-coding upstream 513201 10917584 ~ 10919434 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000016_04226585_04232287 NA coding CI01000016 null 4226439 ~ 4232287 (-)
grasscarp (Ctenopharyngodon idella) G385427 NA non-coding CI01000195 null 1196939 ~ 1197214 (+)
mexican tetra (Astyanax mexicanus) G320278 NA non-coding NW_019172885.1 APWO02000026.1 1334670 ~ 1336092 (+)