XLOC_010473


Basic Information

Item Value
gene id XLOC_010473
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 10425747 ~ 10428540 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00022121
atttttttttttttttatacaacagttctgtctggttctcgaatctgattggctgatagccgtgatatatttaagtcatatcagcacccgtacagccttttacatacaaccagcaaaaagcagacactacagatgtAAAAGATGCTTCTTCAACTGTTAACTGTCAGCTAATTACTTGAATCCAATGCGAacgaaagtagttcctcatacaaacgtttttgagactctccatgtttgattttgtatttatatacacaattatgccgtcaaactgttgtataaacgcaatatcacacgagtagcagtgcgatatggctgtacatCAGTACTATTGGGGGCACTAAGCAACacacgttatatatatatatatatattgtatgtgtgtgtgttctattatttaaatgaataattttagtttttaattgtcTTTTTAAAGCGGTTTAGTATAGTCTTCTACgtttgttttgtctgatttttaTGTACCTTTCATTTGAATTAAAGTTTTTAAAGTGGTAATAAACCCACACGGTTgactgatttgttttgtttatggctttcaattttatttcactttatatccattaaaaataaatgaggaAAGTTCTTCTGAAACCAAGGCTGCAACAAAAGTGGATAAGTGGTGTTGCGCTTTATTTGTTGTGTAATATGCAAATAAGATATAGCTAACACaaccatacacacatatattcaaATCTATTCACCAACCACTTCAGATGTCAGCAACTCAGGTGTTTGCAATTGAGATGACTCCCCTGAGCTTCCTCCAAAAGCTTCCAGAACATTGTCTACAGTATTTTCCACCACTCCACCTACGATGGACACACCAAAGTTAAGCACGTGACCCACCCCTTTACCACTTCTCCAGGTAAGTTTGCCAATCCCACTGCCTACAGTTGACACCTGGTGGCCCATTTCTGAGGATACGGCCCATAGGTAATCTACCGTGCCATCCCAGACTGACCCAAGAACAGTTCTAATGATACTAAAACCATTCCCCACTGTTCCTGTCATGATACCCACGGCATCTGAGGCCAGAGTCCCTGTTCCTATGAATCCCTCCTGGAATGCCAGCCCTAAGCTGCCAGCTAGTGGAGAGAGACAGGCGTACATGGTGCACACGCTAGTTTCTCCAGTCTGGTACAAGGTGTTCAAGATGCATGAAACTCCAGAACACACTCCCGAGCCCAGATTGTTGACCAAAGTGAAGCTGTCAACAGGCACCGAGGCCAGAACAGCCAGATCTTCCTGGAGAACATAACCCAGCTGGAAAGGAAGATTAGTGGCTATGTTTACGATTGGAGAGAATGGGGCATAAAGAAGAGAGACGATGGTGGACAAAATGTAGAGAAGAACTGATTCGGAGCGCTCAATTTCTTCGGTGTCCTCCTGAATGTTCATGTCTGAACCCAAGGAAGATTCTGAAGACTCTGAGTTCACTTCCTCATCGATTGATTCTGATGATTCTGCTTCCTGAGTGTTACGCTTGCTAATGTGTTCCTCGCTTTGTGCGTCAGAATTGGGTGTTTCAATGCTATTCATCTCCTTCTTCAAAATGGAAGCAAGTTCCTCTTCCATCTCATGTCCTATTTCACCACAGCCTCCTGAAAACAAACCTGTAACACCAATTCGCTCTTCTAGTGCTTTAATGCTGAGTACTTTCACATCCCCCTCCTTCACTAGCCCAAAACTGAAGCTACCATCTCCGCCTGAAGCAGCACAACACAGTGCTGACCACATCGGTTTCCCTCCACATTCATTAAAGCCGCCCACACCATTCTGCACATAAATTTCCCCGCCATTCTCTGAACACTTCGCTATGATGGAACTCCGGATCAACTCGGCTGTCAGAGAATCCCACTGGAGGAACGGTGAGGATGATGGAGTCTCATCTGAGGTTTCTCTGTAAAGTGCTGGGATGGCCTCATGGGAATCATCATTGATCTCTTCTTGGGCTTCCT

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0048747 muscle fiber development biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0006642 triglyceride mobilization biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0055006 cardiac cell development biological_process
GO:0055013 cardiac muscle cell development biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0045214 sarcomere organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0003015 heart process biological_process
GO:0061061 muscle structure development biological_process
GO:0060537 muscle tissue development biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0034359 mature chylomicron cellular_component
GO:0004197 cysteine-type endopeptidase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00022121 True 1979 lncRNA 0.42 3 10425747 10428540

Neighbor

gene id symbol gene type direction distance location
XLOC_010471 si:ch73-54f23.4 coding downstream 21364 10397440 ~ 10404383 (-)
XLOC_010470 flot1b coding downstream 109388 10287588 ~ 10316359 (-)
XLOC_010469 cep192 coding downstream 164095 10097122 ~ 10261652 (-)
XLOC_010468 ptpn2a coding downstream 353860 10055492 ~ 10071887 (-)
XLOC_010467 cep76 coding downstream 372698 10025896 ~ 10053049 (-)
XLOC_010474 abhd16a coding upstream 48993 10477533 ~ 10516970 (-)
XLOC_010475 g6fl coding upstream 94056 10522596 ~ 10547781 (-)
XLOC_010476 rabac1 coding upstream 400247 10828787 ~ 10837245 (-)
XLOC_010477 NA coding upstream 421166 10849706 ~ 10859614 (-)
XLOC_010478 CU468227.1 coding upstream 487750 10916290 ~ 10916404 (-)
XLOC_010626 CR392024.2 misc upstream 10466572 20895112 ~ 20895175 (-)
XLOC_010466 NA non-coding downstream 412142 10012985 ~ 10013605 (-)
XLOC_010461 NA non-coding downstream 663994 9759176 ~ 9761753 (-)
XLOC_010458 FO704756.1 non-coding downstream 859376 9564503 ~ 9566371 (-)
XLOC_010455 CR394537.1 non-coding downstream 1123553 9302079 ~ 9302194 (-)
XLOC_010452 NA non-coding downstream 1746285 8668981 ~ 8679462 (-)
XLOC_010479 NA non-coding upstream 489044 10917584 ~ 10919434 (-)
XLOC_010480 NA non-coding upstream 551512 10980052 ~ 11011652 (-)
XLOC_010482 BX005242.1 non-coding upstream 1009329 11437869 ~ 11538821 (-)

Expression


Co-expression Network