XLOC_010474 (abhd16a)


Basic Information

Item Value
gene id XLOC_010474
gene name abhd16a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 10477533 ~ 10516970 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020562
CGTACTAGTTCCTGACCGAGGTGAGAATGGCCGGCTTGATGTGGCTTCGGTGCATTCTAGGGCCCAATCTGCAGCGGATCCACCGCTCGCCGGACCAGACCCGCACTGACGGCCGATCGGCGCGCAGGGGTTGGAATTATCAGCCCAGAGGTCTGGagagacacacagacagcatcCTCGGCTGGGCGTCAGTGCTGTGGTCTCTGTCATACTACACTTCTCCACTGCTCCTCTGCTATCTCTACAGGAAAGGGTACATCTGCAGCAGTAAGCTGGTTCCTCTGAGTCAGTATGTTGGAACAGCGCTGGTCTGTCTGCTCGGAGTGGCCTGTCTGAGAGGTTGGGGACGCTGGAGAAACCCTGAGTACCTTCAGTTTATCAGCATACTGGAGGAGACCAGGAACAACCACACAACAAACAACAAGAAAAAACTGGCATGCTTTGACTTCGACTTCAAACACTGGCCTGCTGATTTCAGCTGGAAAGACGTTAGTAGTCCGAAATCATCTAAAGGTGGCGTGTCTTTGCTGAGACCTGAACCCAAACACAGAGGAGCAGCAGACACTGTACTGAGTTCAGTTCGCACACTGCCCTGCCACATCCTGAGttATGTTATTGCTCACTCATTCGGCCGGAGGATGCTGTACCCAGGCTCAGTGGGTTTGCTACAGAAGGCCATGAGACCAATGTTACAGCAGGGCCAGGCCAGACTCGTAGAagagTATGAAGGTCAGCGGAACAAACTGGTGGCTTGTGATGGGAATGAGATCGACACCATGTTTGTGGACCGGAGGAGAGATGGAGGAACAGCTGGCAAAACTCTGGTGATCTGCTGTGAGGGAAATGCAGGATTTTATGAGGTCGGCTGCATGAACACACCACTCGAAGGTGGATACTCAGTGTTGGGCTGGAATCACCCAGGCTTTGGCGGCAGCACAGGAGTTCCTTTTCCTCAAAACGAGGCCAACGCGATGGACGTGGTCATTCAGTTTGCTGTGCACAAACTGGGCTTCCAGTTGAGTGACATCATAGTTTATGCCTGGTCGATAGGGGGATTCACAGCCAGTTGGGCTGTGATGTCATACCCAGAGATCAGAGCTCTGGTTCTCGATGCCTCATTCGATGACCTGTTACCCCTTGCACTGAAGGTCATGCCGGACAGCTGGAGACCCTTGGTCACACACACAGTGAGGCAGTACATGAACCTCAACAATGCTGAACAGCTCTGCAAGTACCAGGGACCAGTGTTATTGATCAGAAGAACCAGAGATGAAATCATCACCACCACGGGTCCAGAAGACATCATGTCTAACAGAGGGAACGACCTGCTTCTCAGGCTGCTCCAGTACAGgtatCCTAAGGTGATGACAGATGATGCTGTTACAGCGGTGAGGCAGTGGCTCGCAGCAGGCACACAGATTGAAGAAGagtcAGTGTACACGGGCTATGAGGTGGATGATGACTGGTGTTTGTCTGTTCTTCAGTCCtatcagacagacagagagacgcTGTTCCCCTGGAGCGTCgGTGAAGATATGACACTCGAGGGCAGACGGCAGCTCGGTTTATTCTTGGCACGGAAGTATATGCGAAACTTTGAGACGACGCACTGCACTCCCCTCCCCATTTCTGAGTTCAGGCCTCCCTGGAAACTGTAGAGGCGCTGAGAAAGAGCACTGGAGGTCAAAgggaaacacacagacacacgccgGTACTCAGAATCAGATCTACAGGATGGCAGGGAGCAATTTAGCAGTAGTCATTTGTATAAATGTGACCtggttatttgtttatgttttgttggCATGGTTTGATAGAGGCGTTTTAAATTATTGGTTGTGCTCTTCCTGCACCGCAGTAGATGTTTAACGTGAAAATGAGGGTCAGAAACGTGTGGACGCTCAGGTTTGACATCATGTTTGTTTCTTTTGAGAGACTCAGTGATGGGACAGATGATCTCTTGCCTCTTTCTCAgtctgttttcctttttttaattgattttgtgAAGCACTGTAATTATGAACAAACCGTATCGTCAAACAATGTTCTGAATGTTATATTACATATGAATATTAAATGAAACCCGGGGATACTTTTTTGTGGTTGAATTCCTCTATATAAAGTCATTATTTGTGtttcacacacaaaataaaagtttgttattGTAAATGAAA

Function

symbol description
abhd16a Predicted to enable acylglycerol lipase activity; palmitoyl-(protein) hydrolase activity; and phospholipase activity. Predicted to be involved in monoacylglycerol catabolic process and phosphatidylserine catabolic process. Predicted to be integral component of membrane. Predicted to be active in membrane. Orthologous to human ABHD16A (abhydrolase domain containing 16A, phospholipase).

GO:

id name namespace
GO:0052651 monoacylglycerol catabolic process biological_process
GO:0006660 phosphatidylserine catabolic process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0047372 acylglycerol lipase activity molecular_function
GO:0008474 palmitoyl-(protein) hydrolase activity molecular_function
GO:0004620 phospholipase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-010601-2 Predicted to enable acylglycerol lipase activity; palmitoyl-(protein) hydrolase activity; and phospholipase activity. Predicted to be involved in monoacylglycerol catabolic process and phosphatidylserine catabolic process. Predicted to be integral component of membrane. Predicted to be active in membrane. Orthologous to human ABHD16A (abhydrolase domain containing 16A, phospholipase).

Ensembl:

ensembl_id ENSDARG00000078929

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020562 True 2174 mRNA 0.49 20 10477533 10516970

Neighbor

gene id symbol gene type direction distance location
XLOC_010472 NA coding downstream 47640 10421170 ~ 10429893 (-)
XLOC_010473 NA coding downstream 48993 10425747 ~ 10428540 (-)
XLOC_010471 si:ch73-54f23.4 coding downstream 73150 10397440 ~ 10404383 (-)
XLOC_010470 flot1b coding downstream 161174 10287588 ~ 10316359 (-)
XLOC_010469 cep192 coding downstream 215881 10097122 ~ 10261652 (-)
XLOC_010475 g6fl coding upstream 5626 10522596 ~ 10547781 (-)
XLOC_010476 rabac1 coding upstream 311817 10828787 ~ 10837245 (-)
XLOC_010477 NA coding upstream 332736 10849706 ~ 10859614 (-)
XLOC_010478 CU468227.1 coding upstream 399320 10916290 ~ 10916404 (-)
XLOC_010479 NA coding upstream 400614 10917584 ~ 10919434 (-)
XLOC_010626 CR392024.2 misc upstream 10378142 20895112 ~ 20895175 (-)
XLOC_010466 NA non-coding downstream 463928 10012985 ~ 10013605 (-)
XLOC_010461 NA non-coding downstream 715780 9759176 ~ 9761753 (-)
XLOC_010458 FO704756.1 non-coding downstream 911162 9564503 ~ 9566371 (-)
XLOC_010480 NA non-coding upstream 463082 10980052 ~ 11011652 (-)
XLOC_010482 BX005242.1 non-coding upstream 920899 11437869 ~ 11538821 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000016_04264738_04270463 ABHD16A coding CI01000016 null 4263929 ~ 4272171 (-)
bowfin (Amia calva) AMCG00006416 LOC104947235,LOC104953484 coding CM030134.1 CM030134.1 4099447 ~ 4108705 (-)