CI01000069_02435303_02436830 (EMC10)


Basic Information

Item Value
gene id CI01000069_02435303_02436830
gene name EMC10
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 2434799 ~ 2437079 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000069_02435303_02436830.mRNA
ACACACATCTGTCTTTAACGGCAAAAAACAGCGGAGATCAGAGTTTAGTCACGCCCCTGCTTGAAGTGTACAGTTCGGTGACGCTCTATTAAGCTTCACACACCAATAAACGCTCTTTTGAACTTTAATTTGGGGGAGAGATGACATTTCATGAGAAACGAATCTCATCTTCATCACATCTTCAATGTTTCTACGACTTTTGTTTTGAAACGCCGTATTTCCGTTACACAAAGCGGAAGTCTTGACAAAATGGCCACGATTAGAGCATTGTCGCTTATTTTGTCCGTCCTGTCAATTATTACGCTTTTATGGACACAATCTGGCGAGTGCAATAACGGTCGAAGGTTAGGAGATGCGGTGGACACCGATTTCAGCGGATTCTCTGTGCCACTAGAGCATTCATTTGAAGTGGATGATGTTCCCAGATTTCGCCTTCGTGGTGCCCTACAGTTCAGGGGTGGAAGAGAAAACAGTGTGTATCTCTCACAAAACCAACTCTCTGAGAAAGACAGGACTATATTGAAGGATGTGGCAGCAGTTGATGGTCTGTACAGGATCCGGGTGCCCAGAGTCTCTCTACAGGTGGATCGACAGACAGAGAGACAGTCTGAAGGTTACCTTACTGCGTTCGTGAGAGCTTGCTCATTAGTGGAGTCCCACCTCAGTGACGTCATCACCCTTCACACCGATGTCAGCGGATATGTCATCGGCATTTCCATAGTGACAATCCCCGGGTCATGTCGTGGAATAGAGGTGGAGGATGAGGTTGACCTGGAAGTCTTTAACACAACAATAAGCGTTGTGGCACCAGTCACTGCACCAGCGTGAGTTTACATACACACATTATTTTTGTTTGGTTATTATGCTTGTTGTTGTCATCTGTTGCCGGTGTACAAGCAGAAACATGTAGTGGTAGGTGACTGTGGTATTTGTCCCGCCCCTCCTCCACTGTGATTGGACGGCTGGGTAAAAAGTGACAGTGGCGAGAGCTGCGTTTTACCCAAAGTTGAACATTATTCAACTCTCGGCGACCGGTAAAAATTGCCGAGCGCTCAGGATGAAGCAGACGCTTAGCTCATCGTTACACTCCTGCCGTTTTAAAAGTGTGGTGCTCCCATTGAAAACAATTAGAAAAATGTGCTAGCCTCGGAAAAAACACTTTGGTGGACACGTGGCCTAACAGTCAGACTGCTACCTCTGTTACTTAGTCTACACCAGTGGTTCTCAACATTTTTGACCCAAAAGCCCCCATTTGTCCAAGACAAAATTTGAAGGCCCTCCTATCTAAGGTGATATGTATATTTGGTAAATCTGTATAATACAAATAATTAA

Function

symbol description
emc10 Predicted to contribute to membrane insertase activity. Predicted to be involved in protein insertion into ER membrane by stop-transfer membrane-anchor sequence and tail-anchored membrane protein insertion into ER membrane. Predicted to be integral component of endoplasmic reticulum membrane. Predicted to be part of EMC complex. Orthologous to human EMC10 (ER membrane protein complex subunit 10).

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000069_02435303_02436830.mRNA True 1332 mRNA 0.45 5 2434799 2437079

Neighbor

gene id symbol gene type direction distance location
CI01000069_02412637_02416392 NA coding downstream 18407 2412281 ~ 2416392 (-)
CI01000069_02381459_02390386 TBC1D17 coding downstream 44413 2381315 ~ 2390386 (-)
CI01000069_02371598_02374187 NA coding downstream 60459 2371193 ~ 2374340 (-)
CI01000069_02363715_02370330 NUCB1 coding downstream 64469 2363135 ~ 2370330 (-)
CI01000069_02320726_02344577 PPFIA3 coding downstream 90222 2320726 ~ 2344577 (-)
CI01000069_02501063_02501702 NA coding upstream 63954 2501033 ~ 2502614 (-)
CI01000069_02503984_02508234 LRRC4BA, LRRC4B coding upstream 66374 2503453 ~ 2508758 (-)
CI01000069_02563632_02574422 MED25 coding upstream 125800 2562879 ~ 2574422 (-)
CI01000069_02589498_02621318 SYT3 coding upstream 152390 2589469 ~ 2621641 (-)
CI01000069_02652051_02660623 NA coding upstream 213714 2650793 ~ 2660623 (-)
G275610 NA non-coding downstream 41415 2391983 ~ 2393384 (-)
G275597 NA non-coding downstream 72162 2360979 ~ 2362637 (-)
G275566 NA non-coding downstream 129844 2304551 ~ 2304955 (-)
G275590 NA non-coding downstream 133227 2301356 ~ 2301572 (-)
G275588 NA non-coding downstream 136497 2298077 ~ 2298302 (-)
G275629 NA non-coding upstream 48658 2485737 ~ 2486791 (-)
G275670 NA non-coding upstream 202433 2639512 ~ 2639749 (-)
G275671 NA non-coding upstream 202708 2639787 ~ 2640038 (-)
G275672 NA non-coding upstream 203256 2640335 ~ 2640534 (-)
G275681 NA non-coding upstream 331877 2768956 ~ 2769312 (-)
CI01000069_01645966_01647142 NA other downstream 787473 1644522 ~ 1647326 (-)
CI01000069_00952894_00955774 NA other downstream 1479009 952361 ~ 955790 (-)
G275178 NA other downstream 1488995 926923 ~ 945804 (-)
CI01000069_00044853_00051264 YPEL1, YPEL3, YPEL2, YPELD, YPELA, YPELC other downstream 2387585 43906 ~ 52896 (-)
CI01000069_02997434_03008924 NA other upstream 551947 2997275 ~ 3008924 (-)
G275699 NA other upstream 555425 2992504 ~ 3078168 (-)
CI01000069_03415853_03417644 LIMD2 other upstream 975894 3412973 ~ 3417644 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location