CI01000069_02895817_02903000


Basic Information

Item Value
gene id CI01000069_02895817_02903000
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 2895690 ~ 2903000 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000069_02895817_02903000.mRNA
ATGTCTACACCTTTAGAACAAGGAATTAAACGAAATTCAAAAAGTTCAAACAGCACCTCTGAGGCATCCACCATTCTCCCAGAATCCTCTCTGACCTGGTGTTTGGCTCAGCTGTCCAAAACAAGCACATTAGCTGACAGTCCCAGCAGTGGACTGACGGGAGCTGACAATAAGCCCATCACTGGAGGAGACAAAGCCAGGGATACAGACAAGAGACTCAAAGTTGGTCAATGGAGGGCGCTTGTGGCCATTCGGACGCAGCACATCAAGGGAGGTCATGCCATGATAGCCCGCTACCAATCACGAGGAGGACTCCGTCCTTTACTGGATCTCCTCAAGCGGCCAGAAAGCTCCAGAAAGTTTCTGGACTTGGCTCTTAGCATACTGGCCAACTGCTGCACTGAAAAAGGGACAAGAGTAGAAGTAAGAAAGCTTGATGGCATATCTGTTGTTGTGGATGTCCTCAAGAGGAATGTCTCTGTGGAGACGGTGCAAAATCGAGCAGCACGAGCTCTAGGAAATCTCGCCATGGACCCAGAGGGTTCTGCTGAGGTCCACTCTGCAGGTGGTGTTCCACTTCTCCTGCTCTGCCTGTCTATCTCTCCACCTCCATCCTCTCCCTCTTCACTTACTCCAACACCTGAACTCAGCGCTTCTAAGGTGGAATGTCTCCAATCTGCTGCCCGGGCGCTCATCTACCTTTCTGACACGCCGGCGAACCGACTCCTGCTGCTTTCACAAGGGGCTCTTGCATCTCTTGCTTTGTTCATAGCTCCAGAGTACCCTTTAGCTCTGAGACGTGCTTCTCTTCGTGCCCTTCATGAGCTCACCAGAGGTTGCAGTACGGAGTGCGCCAGAGAGATGTCCAGGTCCGGCGCATTGACTCAGCTGGGGGTCCTCGCCTCAGGAGAATGTGGTCGACATTTGGAAGAGCTAGCTTTGAAGACTCTGGCTAACTTGTGCTCTCAAGGCTGCCTGAGGCCACTGGTCGGTTCTTTGGGAGTCATTCAGAAGTTTGCAGAGGAGGTGAAGAAAGATCCTCTGAAATCGGGTGTGTTCTTCAAGGCCCTGTGCCTGTGCTGCAGAGAGGCTGTGAACAGGGCTAAAATAAAGGAGAGCGGGGGACTGGAGGTGCTGATCAGCTTTTTATCCGCCCATCAAAACCATCCTCTCACTCGTTTCGCTTTTCTAGCTTGTGTGGACTTTGTCTACGATGAATCGGCTCTTGAACAGCTGCAGGAGCTTGGGTTGGTGCCGCTGCTGATCAGGCGGTTGGTGGAACTTGCTCAAGGAGAAGAACTGACCGCTGGAAGGATGGACACCAGCCTGTCCTTTAGCTCTCCATGCTCTGAACTGATGACCTCATGTTTTGACTCATTTGACTTCTCAGCCCTTGAAGGGAACAAGAGGGAAGATGTGAATAAAGACCAGACGTCAGGATCATCCAGCTTTCTCAGCCTCAGGTCTTGGCTGGTATCTGAGGGTCTGATCTCATCTGAGGGTGAGCTGACTGAATCCCCTTGTGGAACTGATGTCTTTGGTGGCAGCCCTCAATCCTCCGTCTCATCGTCACCGCTTACATCTTTTTCTGAGCTCTCCCAAACCCCGACCTTGCGTCCGCCCCACTTTTCTCCCTCCACCCGCTCTAAACCCATCCGACTGTCTTCTTCCTCCACCTCCACCTCCACCTCCACTCCAGTATCTCCTCGAAACATTCCAGGGTCGCCTTCATCTTTACAGCCCTCCTGTACCTCCACCCCTCAAGCTGAGCAACCGTCTTCAGTGACAAAACCTTCAGTCACCCCCTCATCTCCCCTCCAAATCTCCTCTCCCCCCAGAAAGAGACTCCGTGCGTCTTCAACCTCTTCTGCACCCTCCTCTTGCTATGGCGTGGTCGCCCTGGAGAGCCCCCCTGTGATGTCAAAAACCCCAGTCTACCATCACCCGTATCACCCTGAGGCCTGGGCCCCAGAATCCCCCATTTTTCTGCTCCTGTCGCGCTTCTCCCATGCCTCAGACCCCAGCACGGCGCTCATCAACACAAACGTTTTCTCCGGGCTGTTGTACTACCTCACCCAGCACCATGACCCCAGCGGGCGGTGCTTTCGGATGCTAGGGCGGCTCAGCTGCAACCCAAACTGCTTGCAGGCTTTGGTTAGAACTGGAGCCGTGGCTCTGATCAGACAGAGACTGTGTGTGAGAGGAGAAGAGATCGGGGGATGCAACGGAGGATTAGACAGACAATCAGAAAAAGTCAAAGGCAAAATCACACAACTAGGTTTGTGTCTGCTCAGTAATCTGAGGATTCAGAGCGAGTCTGGATTCGGCTCTGGAGTTCTTACACATATCATGCTGTCAGGCTCCGAATCTGACAAGCTGTACTGTGTCCTTTCTTTGCCTCTGATTAACAGCAACAGAGTTCTTTTGAAGAAGCTGCTGCTGGATAGTGGCGGACTGGCAGCAGCTCTTGAACTGATTGACTGTCACAGTGATGATAATGATGATAATGAAGATGGACAGTCTGACAAATGTAGGACATTTCTTGCCGGCTGGTTGCATCCTCTTGAGCAGGTGTCCTCTTTGAGATTTAAATTCCTGTACGTCTCTCTTTTGATTGGCTGCCTCTCTAATCTGCTGTCAGGCTCCAAGGAGGACAGAAAGAATTGTAGCATAGATTCCAGAATGGAAACAACCCAAGTGCTGGATAAGTCCCAACCGCGACAGAACCAATCATGTCCCTACCTGAAAGCAACTCATGACCTAACTTTCCTTCTGGATGATGGAACCCTTCTCCCAGCCAATCATGAGGCTGTCACTGGGGAAGAGGGAGCTAATGACGTCGGGTCTGAGTATTTCAGAGCCCTGTTGATGGGAGGGTTTGGGGAGGCACAGAAATCTAAAGGTGAGGCCATCCGGATCAAGGATGTAAACCGTGGAGTGCTCTTACCAGTTCTCCACTACCTGCACGGATGTCGTTTGACTGATGGAAACGAAGACCACATGTCAAAGCAAGATACAAACTGCCTTGTATTGGCCTCTCTAGTCTCTGGTGGGCTAGGTCGACCACAGGATGAGGTTGAATCATGCTTGGCAGAAGAGAAGGAATTTCAGAAAACCCCACTCGCCGAAATGATGGTTGGGGCTTGTAGGTTTTTAGTACCTGGTTTACAAAGGGCAGCTGAGGACCTGTGTATCGGTCTTCTCTATTCTGTCCTAAAAAGCCTGACCAAACCTTGCTGTTCAAATGGTAACACTACAACGACTAGCAGAATGGATGTGGGTTCGGTCTGCAAGGGTCCTGAAGGATCACCACAGCTGACTAAAACCGAAGTGTCAAAGTGTCACCCTAAACCCTCTCAGAGTTCCAAACAGGTTCCATCATCATCGTCATCAACTTCTTCAGACAGTGACACTAAAGGAGCTTGGCTGAGGTCTCTCTTGCCACAAGTGTACTGGTTCTCACAGCGCTACTCTTACCTGAGACTGGGTCAGGTCTGTTTATCCTTGCTGCTGCAACCTCAGGGGCTCCATCCTACACCCCTTCACCCCTCTCTGTTCGCTGATTGCTTCCTGCGCTTGGCGCGAGAGGCGGACTGCGCCAAAGGGCTGAGGCAGGACATCTTAAACCTTGTCAAAACAGCCCTCAGCTAGAGGGCAAACAGTAGTGGATAGTGAAATGAATGTAATGAATTGTTGGTGTAAACTAATTTAGTAGCTGCTTAAATGCACACAGAAAGGGATTGGTAATTACTGGATTTTGGGGGGCATTTGGGATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000069_02895817_02903000.mRNA True 3778 mRNA 0.51 7 2895690 2903000

Neighbor

gene id symbol gene type direction distance location
CI01000069_02865724_02867576 NA coding downstream 28114 2865701 ~ 2867576 (-)
CI01000069_02839630_02842415 PAQR4, PAQR4A coding downstream 53204 2839167 ~ 2842486 (-)
CI01000069_02822758_02831326 NA coding downstream 64364 2822490 ~ 2831326 (-)
CI01000069_02801133_02811021 PPP1CA.L, PPP1CAA, PPP1CAB, PPP1CA, PP1G, PPP1CC coding downstream 84476 2800365 ~ 2811214 (-)
CI01000069_02781134_02792831 SUV420H2 coding downstream 102859 2780399 ~ 2792831 (-)
CI01000069_02906527_02909006 NA coding upstream 3049 2906049 ~ 2909006 (-)
CI01000069_02911501_02921826 TCEB2, ELOB, TCEB2.L coding upstream 8481 2911481 ~ 2922687 (-)
CI01000069_02934862_02943383 ARL6IP1 coding upstream 31092 2934092 ~ 2943383 (-)
CI01000069_02944962_02977798 SMG1 coding upstream 41833 2944833 ~ 2977798 (-)
CI01000069_02997434_03008924 NA coding upstream 94275 2997275 ~ 3008924 (-)
G275658 NA non-coding downstream 724 2892738 ~ 2894966 (-)
G275681 NA non-coding downstream 126378 2768956 ~ 2769312 (-)
G275672 NA non-coding downstream 255156 2640335 ~ 2640534 (-)
G275671 NA non-coding downstream 255652 2639787 ~ 2640038 (-)
G275670 NA non-coding downstream 255941 2639512 ~ 2639749 (-)
G275843 NA non-coding upstream 316809 3219809 ~ 3220041 (-)
G275856 NA non-coding upstream 358296 3261296 ~ 3261504 (-)
G275814 NA non-coding upstream 377912 3280912 ~ 3284191 (-)
G275772 NA non-coding upstream 403489 3306489 ~ 3312896 (-)
G275876 NA non-coding upstream 454221 3357221 ~ 3357421 (-)
CI01000069_02589498_02621318 SYT3 other downstream 265374 2589469 ~ 2621641 (-)
CI01000069_01645966_01647142 NA other downstream 1248364 1644522 ~ 1647326 (-)
CI01000069_00952894_00955774 NA other downstream 1939900 952361 ~ 955790 (-)
G275178 NA other downstream 1949886 926923 ~ 945804 (-)
CI01000069_00041648_00043198 EHD3 other downstream 2852318 41648 ~ 43441 (-)
G275699 NA other upstream 89504 2992504 ~ 3078168 (-)
CI01000069_03415853_03417644 LIMD2 other upstream 509973 3412973 ~ 3417644 (-)
CI01000069_03768812_03787588 BRSK1 other upstream 862673 3765673 ~ 3787588 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_026447 armc5 coding NC_007114.7 CM002887.2 31042585 ~ 31057624 (-)