CI01000069_03027056_03028752 (APNL)


Basic Information

Item Value
gene id CI01000069_03027056_03028752
gene name APNL
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 3026925 ~ 3028752 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000069_03027056_03028752.mRNA
CCGTCAATCAGATCTATCGTCCACCATCATGACTGAGTCTGCTGAGGCTGCCGCTGCCAACGTGAGCAGCAGAAGACACGCCACCATAGAGATCACCAACCTGACAAGCAACTACTGCCTCATCAACCCAAAAGTCTATCTGGAGAGTGGTGAAGCCTCCAATCCACCTCAGCCCACAGTGCGCCCCCTCAAGACTGAAGTATGCACTTTCAGCAAGACCAGCGCTCACGCCACCGGAAGCGTGGGAGTTCTGACCTATGACCTGTTCGAGCGAAGCAGAAATGACTACATTGAGACCCTGGCCCTAATGTTTTCTGTCCCATGGGACTATAATCTGTATAAGAATTGGTTTGCAATAGGTATCTACCCGAAAGGAAAGGAGTGTGACCAGGCCCTTTATAAAGAAATGTACTATCAAAAAAATCAACAGGGCTTTGTGAGGGAGGAGGCCAATGGGTCAGGCATTAACTTTGAGGGCAAATACCTGGACATCAGGGCCACCATGTGTCCAATGGGCAGGGCTATCGTAAAACTGGAGGTGTGGGACAAGGTGCTGTCTCCTTTGAGTCAGCAGGTTTGCTGAACATACTGTATAAGTCAGCCATTTTACTTAATCAAAATCATACAGAATCAAACTTTTTTTAGACTTACTTGTATGCCTAATGTGTTATTGATATCATAAATGTTTGCATATACATTTACCAATGTAATAAA

Function

symbol description
apnl Predicted to enable channel activity. Predicted to act upstream of or within cation transport; hemolysis in other organism involved in symbiotic interaction; and pore complex assembly. Is extrinsic component of membrane.

NR:

description
unnamed protein product

GO:

id name namespace
GO:0046930 pore complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000069_03027056_03028752.mRNA True 714 mRNA 0.46 2 3026925 3028752

Neighbor

gene id symbol gene type direction distance location
CI01000069_03014089_03015762 ITPRIPL2 coding downstream 10419 3012696 ~ 3016506 (-)
CI01000069_02997434_03008924 NA coding downstream 18001 2997275 ~ 3008924 (-)
CI01000069_02944962_02977798 SMG1 coding downstream 49127 2944833 ~ 2977798 (-)
CI01000069_02934862_02943383 ARL6IP1 coding downstream 83542 2934092 ~ 2943383 (-)
CI01000069_02911501_02921826 TCEB2, ELOB, TCEB2.L coding downstream 104238 2911481 ~ 2922687 (-)
CI01000069_03032171_03032924 NA coding upstream 3238 3031990 ~ 3032924 (-)
CI01000069_03242808_03248880 NA coding upstream 213067 3241819 ~ 3248880 (-)
CI01000069_03298533_03302831 CCDC47 coding upstream 269445 3298197 ~ 3302831 (-)
CI01000069_03315611_03353645 KCNH6, KCNH6A coding upstream 286760 3315512 ~ 3353733 (-)
CI01000069_03365921_03371931 GFAP coding upstream 336711 3365463 ~ 3371944 (-)
G275658 NA non-coding downstream 131959 2892738 ~ 2894966 (-)
G275681 NA non-coding downstream 257613 2768956 ~ 2769312 (-)
G275672 NA non-coding downstream 386391 2640335 ~ 2640534 (-)
G275671 NA non-coding downstream 386887 2639787 ~ 2640038 (-)
G275670 NA non-coding downstream 387176 2639512 ~ 2639749 (-)
G275843 NA non-coding upstream 191057 3219809 ~ 3220041 (-)
G275856 NA non-coding upstream 232544 3261296 ~ 3261504 (-)
G275814 NA non-coding upstream 252160 3280912 ~ 3284191 (-)
G275772 NA non-coding upstream 277737 3306489 ~ 3312896 (-)
G275876 NA non-coding upstream 328469 3357221 ~ 3357421 (-)
CI01000069_02589498_02621318 SYT3 other downstream 396609 2589469 ~ 2621641 (-)
CI01000069_01645966_01647142 NA other downstream 1379599 1644522 ~ 1647326 (-)
CI01000069_00952894_00955774 NA other downstream 2071135 952361 ~ 955790 (-)
CI01000069_03415853_03417644 LIMD2 other upstream 384221 3412973 ~ 3417644 (-)
CI01000069_03768812_03787588 BRSK1 other upstream 736921 3765673 ~ 3787588 (-)
CI01000069_03804630_03807180 PRMT1.S, PRMT1 other upstream 775864 3804616 ~ 3807180 (-)
CI01000069_04932463_04940554 NA other upstream 1910769 4932144 ~ 4941471 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_026455 apnl coding NC_007114.7 CM002887.2 31249885 ~ 31254979 (-)