CI01000069_03298533_03302831 (CCDC47)


Basic Information

Item Value
gene id CI01000069_03298533_03302831
gene name CCDC47
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 3298197 ~ 3302831 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000069_03298533_03302831.mRNA
ATGAGGCACCTGGTCTTCCTCCTCCCAGCCCTGCTGCTCCTGCTGGCCCTGCCGGACACTAGGGGGCGCTACAACGATGACTTTGATGACGGGGAGGACATCGCAGAGTTTGATGACAATGACTTTGCTGAGTTTGAGGATGTCATTGAGGACCCAGCAGTCGATGCGGAGAAAGAGCCACCCCCACGAGCAGCCCCCTCATCCACACCCATAGAGGACGACGAAGACGAGGCCACGGTGGAGAACGAAGACGGCCAGGATGAGTTTGAAGATGGCGATGCACAGGATCAAGACATGTACAGCAAATATGACAACGAGGAGTTTGAGGGCTACGAGAAGACTAACCCTTCATTCAAAGACACTCTTATATACAGAGAGGTCCCAGCACACCTGCAGAACAGCTGGGAGAGTTACTACATGGAGATCTTAATGGTCACCGGTCTTCTTGCCTATATTATGAACTACATAATTGGCAAAAACAAGAACAGCAGGCTCGCCCAGGCCTGGTTCAATTCCCACAGAGAACTTCTCGAGAGCAACTTTGCCCTCGTGGGGGATGATGGTACCAGTAAGGAGGCCACCAGTACGGGGAAACTGAATCAGGAGAATGAGCACATCTATAACCTGTGGTGCTCAGGACGTGTTTGTTGTGAGGGGATGCTGATTCAGCTTAAGTTTCTGAAAAGACAGGACCTGCTGAATGTGCTGGCCAGGATGATGAGACCAGCCTGTGATCAAGTGCAAATTAAAGTGACTCTGAATGATGACGACATGGACACGTTTGTGTTTGCCGTGGGGAGTCGGAAGGCCATGGCACGAATGCAGAAAGAGATGCAGGACCTGAGTGAGTTCTGTGGTGATAAGCCCAAATCAGGGGCAAAATATGGCCTCTCTGAATCTCTGTCTATTTTATCAGAGATGGGAGAGGTCACGGATGGAGTGATGGACAGCAAGATGGTACATTACCTCACCAGTCATGCTGACAAGATTGAGTCCATCCATTTTTCGGACCAATTCTCTGGTCCAAAAGTTATGCAAGAGGAGGGTCAGCCCTTAAAGCTGCCCGAGACCAAGAAAACACTGCTGTTTACATTTAATGTGCCTGGGATGGGTAACACATCTCCCAAAGATATGGACGGTCTGCTGCCTCTGATGAACATGGTGATCTACAGCATCGACAAGGTCAAGAAGCTCCGCCTCAACAGAGAGGGGAAGCAGAAAGCAGACAGGAACCGTGCTCGTGTGGAGGAGAACTTCCTGAAGCAAACTCACGCTCAACGACAGGAGGCCGCTCAGACACGCCGAGAAGAGAAGAAGAGAGCGGAGAAGGAGAGGATCATGAATGAGGAGGATCCTGATAGACAGCGCCGCCTAGAGGAAGCCGCCCAACGTCGCGAGCAGAAGAAGCTGGAGAAGAAGCAGATGAAAATGAAGCAGATCAAAGTGAAAGCCATGTGAGACACACAAACACACACGTTCATAGACATTAGAGAAAGAATCTACTACTTCCACACCTGCTAAGATACACTCTTCTACATGAATGTTCATGCCATTTGATTGGCTGCTATCACACCCGTAGAAAAACTCTGTCCAGTCAGGAGAAAGCAGCTGGTTGTTAATGAGTAAATCTGATCTTTAAAAGACAACTGGATTGGAGATGGTCTGTTTGAACTGTGTGAACATGTTTTACTGTAGCAGTCATTTAAAGCATGTGTTTTCTACATAATTGCATGCCAGTTTTTAATTGCAATAGGATCAAGAATGTTGCTTTTTTGTGGACTTTGCTGTAATAAA

Function

symbol description
ccdc47 Predicted to enable calcium ion binding activity. Predicted to be located in rough endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Orthologous to human CCDC47 (coiled-coil domain containing 47).

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000069_03298533_03302831.mRNA True 1794 mRNA 0.48 12 3298197 3302831

Neighbor

gene id symbol gene type direction distance location
CI01000069_03242808_03248880 NA coding downstream 49317 3241819 ~ 3248880 (-)
CI01000069_03032171_03032924 NA coding downstream 265273 3031990 ~ 3032924 (-)
CI01000069_03027056_03028752 APNL coding downstream 269445 3026925 ~ 3028752 (-)
CI01000069_03014089_03015762 ITPRIPL2 coding downstream 281691 3012696 ~ 3016506 (-)
CI01000069_02997434_03008924 NA coding downstream 289273 2997275 ~ 3008924 (-)
CI01000069_03315611_03353645 KCNH6, KCNH6A coding upstream 12681 3315512 ~ 3353733 (-)
CI01000069_03365921_03371931 GFAP coding upstream 62632 3365463 ~ 3371944 (-)
CI01000069_03382399_03395900 MAP3K3 coding upstream 79301 3382132 ~ 3395900 (-)
CI01000069_03415853_03417644 LIMD2 coding upstream 111294 3412973 ~ 3417644 (-)
CI01000069_03430311_03432182 NA coding upstream 127452 3430283 ~ 3432207 (-)
G275814 NA non-coding downstream 14006 3280912 ~ 3284191 (-)
G275856 NA non-coding downstream 36693 3261296 ~ 3261504 (-)
G275843 NA non-coding downstream 78156 3219809 ~ 3220041 (-)
G275658 NA non-coding downstream 403231 2892738 ~ 2894966 (-)
G275681 NA non-coding downstream 528885 2768956 ~ 2769312 (-)
G275772 NA non-coding upstream 3658 3306489 ~ 3312896 (-)
G275876 NA non-coding upstream 54390 3357221 ~ 3357421 (-)
G275878 NA non-coding upstream 57657 3360488 ~ 3360701 (-)
G275750 NA non-coding upstream 292890 3595721 ~ 3627754 (-)
G275826 NA non-coding upstream 304621 3607452 ~ 3614839 (-)
G275699 NA other downstream 220029 2992504 ~ 3078168 (-)
CI01000069_02589498_02621318 SYT3 other downstream 667881 2589469 ~ 2621641 (-)
CI01000069_01645966_01647142 NA other downstream 1650871 1644522 ~ 1647326 (-)
G275178 NA other downstream 2352393 926923 ~ 945804 (-)
CI01000069_03768812_03787588 BRSK1 other upstream 462842 3765673 ~ 3787588 (-)
CI01000069_03804630_03807180 PRMT1.S, PRMT1 other upstream 501785 3804616 ~ 3807180 (-)
CI01000069_04932463_04940554 NA other upstream 1636690 4932144 ~ 4941471 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_026461 ccdc47 coding NC_007114.7 CM002887.2 31705454 ~ 31716157 (-)
bowfin (Amia calva) AMCG00016884 ccdc47,LOC107674171,LOC107658463,LOC107729550,LOC107721963 coding CM030122.1 CM030122.1 33307741 ~ 33318582 (-)