CI01000069_03315611_03353645 (KCNH6, KCNH6A)


Basic Information

Item Value
gene id CI01000069_03315611_03353645
gene name KCNH6, KCNH6A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 3315512 ~ 3353733 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000069_03315611_03353645.mRNA
ACTATCAGTTAGGGCTAAGTGTCATTTTGCGGCTGCTAGGCAACCATCTCAGTGCGTTGTGTTCTATTCCTGAAGTAAAAAGGCGATAATGAGTTTGATGCTGAGGGGCATTAAAGTTCCTGTCACCAAACGCAATTACCATTCAGAGATGGAGAAACAAGATTCAGAGAGAAAAGCAGGCAACCGTAAATTCCTGATTGCTAACGCCCAGGTGAAGAACTGTGGGATTATCTACTGCAATGAGGGCTTCTGTCAGATGTTTGGTTTCTCGCGGGCAGAGATCATGCAGCAGTCCTGCACGTGTCAGTTCCTGGTGGGGCCGGGCACTATGAAGAGTGCCCTGGCACAGCTGGCACAGGCCCTGCTCGGGTCAGAAGAGCGCAAGGTGGAGATCCTCTACTACTCTAAGGAAGGAACATGTAGGCCATGTTTAGTTGATGTTGTTCCAGTAAAGAATGAGGAAGGAGTCGTAATCATGTTCATCCTAAACTTTCAAGAGCTTTTAGACCCGTCTATGAAAAAAGGTGGCATTAAACAGCGGATGACACACAGCTGGCTACAGGCAGGTCAGAGACGCAAGATGAGGCTTAGAATGCCCTCTCTCCGTGTGAAACGGCAGCCTTCCCTCCCTAAGGACCACTTTGAGGGAGTGGTGGTGGACTACCTACAGCCCTCTCATGAGGAGGTGGCTCTGAAAGACCTCCAGATGTCTCCAGACAGCTGCTTGAAATCAGAGACCCAGGCCTTGATTCAGCAGACCCCCTCCTCATGTGGCTTCTCATCCCCACTCTCACGGCCCTCAGACCGGCTAGAGCCCAGTGGACCCCCTCTCAAACACAGCCACTCCAGAGAGAGCGTACACAGTCTGCGTCGGGCATCCTCACTGCATGACATCGACGGCATGAGGGACCAGTGGAGCGATCTGAAGCCCAGTAACTTCAACTCCACCTCAGACTCTGATTTGATGCGGCACCGCACCATTGGCCGCATCCCTCAAGTGACAATATCCTTCGGCTCGGACCGCCTCAGACCTCCTTCCCCCACGGAGATCGAGATCATAGCACCCAGCAAGATTAAAGACCGCACACAGAATGTCTCAGAAAAGGTCACTCAAGTCACGCAGCACTGCTCAGAGAATGCCACCATGAGCTTGAAACAGAAACTTAAGCCTGTACTGTCACTCGGGGCAGATGTGCTTCCTGAGTACAAGCTTCAAGCTCCACGCATCCACAAGTGGACCATCCTCCACTACAGCCCGTTCAAAGCAGTATGGGACTGGATCATCCTACTCCTGGTGCTCTACACGGCCGTCTTCACGCCCTACTCGGCTGCCTTTCTCCTCAACGAGCAGGAGGACGAGAGGAGGCGCACCTGCGGCTACACCTGCAACCCCCTCAACGTAGTGGACCTGGTGGTGGATGTCATGTTCATTATTGATATCCTAATCAATTTCAGGACCACTTACGTCAATCACAACGACGAGGTGGTCAGCAATCCCGCTCGCATCGCTCAGCATTACTTCAAGGGCTGGTTCCTCATAGACATTGTGGCTGCGATTCCCTTCGACCTGCTCATTTTCAGATCAGGTTCTGATGAGCCTCAAACAACCACTCTGATTGGCCTATTAAAGACTGCGCGGCTGCTGAGATTGGTGCGAGTAGCGAGGAAACTGGACCGTTATTCTGAGTATGGTGCAGCAGTGCTCTTCCTCCTCATGTGCACCTTCGCCCTCATTGCCCACTGGCTGGCGTGTATCTGGTACGCCATTGGCAATGTGGAGCGCACCAGCTCTGCCCGTATCGGAGGGATGAAGATCGGCTGGCTGGACAACCTGGCCGACCAGATTGGCAAGCGCTACAATGACAGTGACTCCTTCTCCGGCCCCTCCATCAAGGATAAATATGTAACTGCACTGTACTTCACCTTCAGTAGCTTGACCAGTGTGGGATTCGGAAACGTCTCTCCTAACACCAACCCTGAGAAGATTTTCTCCATTTGTGTCATGCTCATTGGCTCCCTGATGTATGCCAGTATCTTTGGCAACGTGTCAGCTATAATTCAGAGGTTGTATTCAGGCACAGCTCGCTACCACACTCAGATGCTACGTGTGAAAGAGTTCATCAGGTTTCATCAGATCCCAGGAGGTCTTCGGCAACGACTGGAAGAGTACTTCCAGCACGCCTGGTCCTATACTAACGGCATCGACATGAACGCTGCTGACATCTGTCTGCATCTGAACCGCAGTCTGCTGCAGAACTGTAAGGCATTCCGGGGGGCGAGCAAGGGTTGTCTGCGGGCTCTGGCCATGCGTTTTAAGACCACCCATGCCCCACCCGGTGACACTCTGGTGCACAGTGGAGACGTACTGACCGCACTGTATTTCATCTCCCGCGGCTCTATAGAGATCCTCAGAGAGGATGTGGTCGTGGCCATTTTAGGTAAGAATGATATTTTTGGGGAGCCCATTAGTCTGTACGCCAGGCCAGGGAAATCAAGTGCTGACGTGAGGGCTCTGACGTACTGTGACCTGCACAAAATCCTGAGAGACGACCTGCTGGAAGTGTTGGACATGTACCCCGATTTCTCTGACAACTTCTGGAGCAACCTGGAGATCACATTCAACCTTCGAGATGCAGACAGAATCATGCATCAAACCCCAAGCGAGGACTCAGACTGTGGGTACCGTCGACCCAGACACCGGAGGAACCCCCTACAGCGAAACCGGCCTGGTAATGGTGCCTATCTAGTCTACGAGGGCCACAAAAATTATTTTGCTGCAGAACTATACTATTCTGATCTTTCTCTTTTCTTAAATCACCCAGATGGGATGGACCGAGATGGGATAGACACGTACCCAGTCCAGTCCTGTTCCCCTGTGGGGAACCATCGGGGGGCAATACCGCTCTCACACTGGGATGAGTTATGCAGCAATGCCAGTGCTGCTTCCCTGTCCAGTGAGGAGGACTTGAAGCCCCTGGTGTCCGGCCGAGGGACAGATATGTACTCGCCAGGGACAGAGATGCAGGAATACTCCCATTCTGCAGTCAGCCATCTGCCTCCGGGCAACAGCACAGCTTCTGCCATGGGAGGACCACTGGGAGGGCCACATCCGTACACAGCAGCTCCTCTGAATGTGTCGGGGTTATACAGCTATTTGTCCGACCGCAGGGCCAGTCAGTACTCTGAGAGTCAGAGACATTCCTCTGCAGTGCAGGCCTGCTTCCACCATCACAGCCCCTGTGTTGAGGACAGACCGAACCAACTGCAAGCCCGCCTGGAGCTGCTCCAGTCGCAACTCAACAGACTGGAGACCAGGATGACAGCTGATATAAATGTGATCCTGCAGTTGCTGCAGAGGCAGATGGCACCTGTACCCCCCGCATACAGCGCAGTATCCCCTGAACCGCTGGCCCACCCTGCTCACCCCACCAGCCTATACACTACAGCAACGCACAATACTATGCCATCTTTACAGATCACTGACAGTACATCGCCTGGTAAGAGCCCTGACTTGGACAGCTTCAAAGAGAAGTCTCCAGACTCTTTGTCCAGTGGGATCCATCTGACAGTTGCCTCTAATGACACCATGTCCATGTCCCCAGAGACAGAGCTGGCTGTGCCCACAGGAGAGCCTCATCTACAGCCCCCGGGACTGCTGTGTAGAAGCCTGCGCTTTCCATCACTCCCGGACAGTCTGGAGAGTCCAAGCACACTGGAGGGATCACCAGAAATCCAGAGGCACCTGTCCGATCCAGTCTTACCTGGAAGCTAGAGGCCAAAAACAGACTACTGTCCATTCTAAGACGCATATATACCACATTTTCATGGTTTCCCTTTTTTAATCAGCTCAATATTGCACTTTTGGAATAAA

Function

symbol description
kcnh6a Enables voltage-gated potassium channel activity. Acts upstream of or within several processes, including heart contraction; membrane repolarization during cardiac muscle cell action potential; and regulation of ventricular cardiac muscle cell membrane repolarization. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including cardiovascular system; digestive system; gill; immune system; and muscle. Used to study long QT syndrome; long QT syndrome 2; and short QT syndrome. Orthologous to human KCNH6 (potassium voltage-gated channel subfamily H member 6).
kcnh6 Predicted to enable voltage-gated potassium channel activity. Predicted to be involved in potassium ion transmembrane transport; regulation of heart rate by cardiac conduction; and regulation of membrane potential. Predicted to be located in plasma membrane. Predicted to be integral component of plasma membrane.

NR:

description
Potassium voltage-gated channel, subfamily H (eag-related), member 2

GO:

id name namespace
GO:0005216 ion channel activity molecular_function

KEGG:

id description
K04909 KCNH6, KV11.2; potassium voltage-gated channel Eag-related subfamily H member 6

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000069_03315611_03353645.mRNA True 3871 mRNA 0.53 16 3315512 3353733

Neighbor

gene id symbol gene type direction distance location
CI01000069_03298533_03302831 CCDC47 coding downstream 12681 3298197 ~ 3302831 (-)
CI01000069_03242808_03248880 NA coding downstream 66632 3241819 ~ 3248880 (-)
CI01000069_03032171_03032924 NA coding downstream 282588 3031990 ~ 3032924 (-)
CI01000069_03027056_03028752 APNL coding downstream 286760 3026925 ~ 3028752 (-)
CI01000069_03014089_03015762 ITPRIPL2 coding downstream 299006 3012696 ~ 3016506 (-)
CI01000069_03365921_03371931 GFAP coding upstream 11730 3365463 ~ 3371944 (-)
CI01000069_03382399_03395900 MAP3K3 coding upstream 28399 3382132 ~ 3395900 (-)
CI01000069_03415853_03417644 LIMD2 coding upstream 60392 3412973 ~ 3417644 (-)
CI01000069_03430311_03432182 NA coding upstream 76550 3430283 ~ 3432207 (-)
CI01000069_03433325_03435163 NA coding upstream 79554 3433287 ~ 3435275 (-)
G275772 NA non-coding downstream 2616 3306489 ~ 3312896 (-)
G275814 NA non-coding downstream 31321 3280912 ~ 3284191 (-)
G275856 NA non-coding downstream 54008 3261296 ~ 3261504 (-)
G275843 NA non-coding downstream 95471 3219809 ~ 3220041 (-)
G275658 NA non-coding downstream 420546 2892738 ~ 2894966 (-)
G275876 NA non-coding upstream 3488 3357221 ~ 3357421 (-)
G275878 NA non-coding upstream 6755 3360488 ~ 3360701 (-)
G275750 NA non-coding upstream 241988 3595721 ~ 3627754 (-)
G275826 NA non-coding upstream 253719 3607452 ~ 3614839 (-)
G275754 NA non-coding upstream 259020 3612753 ~ 3636263 (-)
G275699 NA other downstream 237344 2992504 ~ 3078168 (-)
CI01000069_02997434_03008924 NA other downstream 315079 2997275 ~ 3008924 (-)
CI01000069_02589498_02621318 SYT3 other downstream 685196 2589469 ~ 2621641 (-)
CI01000069_01645966_01647142 NA other downstream 1668186 1644522 ~ 1647326 (-)
G275178 NA other downstream 2369708 926923 ~ 945804 (-)
CI01000069_03768812_03787588 BRSK1 other upstream 411940 3765673 ~ 3787588 (-)
CI01000069_03804630_03807180 PRMT1.S, PRMT1 other upstream 450883 3804616 ~ 3807180 (-)
CI01000069_04932463_04940554 NA other upstream 1585788 4932144 ~ 4941471 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_026462 kcnh6a coding NC_007114.7 CM002887.2 31728871 ~ 31784082 (-)
bowfin (Amia calva) AMCG00016888 NA coding CM030122.1 CM030122.1 33333462 ~ 33348062 (-)