CI01000069_03415853_03417644 (LIMD2)


Basic Information

Item Value
gene id CI01000069_03415853_03417644
gene name LIMD2
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 3412973 ~ 3417644 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000069_03415853_03417644.mRNA
GACAACAGGAACACGTCTGATGACAAGCCCGTTCAGCGTTCTAAGTCTTTCAGTTTCAAGACACAGAAGGAGACCTGTGCATCATGTGAGAAGACTGTGTATCCGATGGAGAGATTGGTGGCTAACAACCTCATCTTCCACGCCACATGCTTCTGCTGCAAGCACTGCAACACCAAACTCAGTCTGGGGTCCTATGCAGCGCTGCAGGGGGAGTTTTACTGCAAACCACACTTCCAGCAGCTCTTCAAGAGTAAAGGGAACTACGACGAGGGCTTCGGACGCAAGCAGCATAAGGAGCTCTGGGCCTCCAAGGATGCAGAGAGCATCACCAAGACGGCATAAATCCTCAGTGATTTCCAAAACCTACCTTTCTCCTCCACTGGCCAATGATAATGACCCTTTATATACTCTGCCCACATCCTTGACACACAATACACACATGCATCCACACTTAGACACTCCTGAACCAGGCTTTTCATGATATATCAGCACAATCACAGATAGACCACCATGTGTTGGTTTTCTTTGTCCCCCAATTTTAATCTCTAATTTTTATTTAGCTTTAGCAAATATCATTTTGTGTTAATCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTCTAGTGTTGTGGAGTTAACAGTTAGTTGATTGTGACCAAAATGTTTGTATCCCTTTAGGTGGGATGATTCACTTATTAGCATCATTACGATCCTGTTTGGCAGTACTATTATGGTTGATTTCTGTCATAAGAGTGGTTTCAAGATGGTTTCGATTATACACTCAGGTAATGATTCTGGGGTGTTGCATCAAAATTATTCAGCAATCTTTTATGTACAAGGTCGACTTAAATGTTTTTTGATTGATATTTGTCCCTCTAGTTACAACAATCCATACTTTTTTCCAGACTATATGGCCTAACAATGTTCCTTACAATAAGAAACTATCTTTTATTTTGTTTGGTTGGTGCAGGATATTTTATGTGTGAATCTACAGGGTACACTGTACTGTAAAGAACTCGCTTGAGTTTACAATCCCTCATTCCTTTTCTCTTTCCTGCCTTTTCCAAATTTTATATTCTTTTGACGTTAAGAATTAGTAGTACTTTACAGATCCTGTAAAACAGGCCTCTGTGAACTCATCAAATAATAACATATTCTTAAGCGTGTTTATCAAATGTAATTACAAACACGACATTTACTTTGCTGAATATCTACCAATTTTAGTTCATTTTATTATAAATTGACGTCTAGACTTGGACAGTCTTAAATTGCCTCTTTTCTGGCGCCCTCTAGTGTTTTGGATGCTTTTCCTTGTTTGACCTAGTTGTTCTCTTAGAAACTTAATGCCATCTAGTGATATCTATGCTCATCATATCAACCATAGATAGGCCTTTTATTTCTTATTTTAGTCATATTTTTCTGCAGACTGCACAATATTTTTTTTTTAATTATTGTTGCTCAGTGATTTCTTGCAGAGGCATTTGTACATAAGTACCACTAAGCAGAGTGAATGTACTGTGATGCACTGTACTGTACTTATGCCTTGCTGCATGGGACCAAGCTTGTACAACAAATTAAGATATATTCACAGGGAACTAGGTCTCAGAGGAAATGACATTTATGATGCTTCGCACCATTGCCTTCCCCCCCTTTCCACCACTTCCTGTCATCATGTAGTTTTTAACTTTTTCCTGTAGGCTTCTCTGTGACGGGGTTTAGTAGGACTTTGAGTTCACATGTAACCGTGTGGCTCCTAAGTATTGCTCAGGAATATAGATGGGTCGCAATGATCCAACAGCATCACCCCTAGTGTTAAAAGCTGTTGTTCACTAAACGAATCATTTTACAGTCAGAATTGTTACGCAGTTGGGGTTTAAGCAGGAAGGGGGGGTGATGTACATCTAAATGAACACTTCCATCCCAGGTTTTATATGCAGATGTCAGCGTGAAACTGTGACTTTGCATCTTGTGAATTGTCACTGTGGCCATAAGCTGTGACCTCTCCAGTCGTTCATGTATTTGTGTACAAACCTCATTGATGCCATCATGTAGTTTCTTTTAATAAA

Function

symbol description
limd2 Predicted to enable metal ion binding activity. Orthologous to human LIMD2 (LIM domain containing 2).

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000069_03415853_03417644.mRNA False 2070 mRNA 0.39 3 3414125 3417644

Neighbor

gene id symbol gene type direction distance location
CI01000069_03382399_03395900 MAP3K3 coding downstream 18225 3382132 ~ 3395900 (-)
CI01000069_03365921_03371931 GFAP coding downstream 42181 3365463 ~ 3371944 (-)
CI01000069_03315611_03353645 KCNH6, KCNH6A coding downstream 60392 3315512 ~ 3353733 (-)
CI01000069_03298533_03302831 CCDC47 coding downstream 111294 3298197 ~ 3302831 (-)
CI01000069_03242808_03248880 NA coding downstream 165245 3241819 ~ 3248880 (-)
CI01000069_03430311_03432182 NA coding upstream 12639 3430283 ~ 3432207 (-)
CI01000069_03433325_03435163 NA coding upstream 15643 3433287 ~ 3435275 (-)
CI01000069_03441535_03443377 NA coding upstream 23626 3441270 ~ 3443400 (-)
CI01000069_03444473_03455791 NA coding upstream 26748 3444392 ~ 3457756 (-)
CI01000069_03474790_03478425 RNF113A coding upstream 57146 3474790 ~ 3478425 (-)
G275878 NA non-coding downstream 53424 3360488 ~ 3360701 (-)
G275876 NA non-coding downstream 56704 3357221 ~ 3357421 (-)
G275772 NA non-coding downstream 101229 3306489 ~ 3312896 (-)
G275814 NA non-coding downstream 129934 3280912 ~ 3284191 (-)
G275856 NA non-coding downstream 152621 3261296 ~ 3261504 (-)
G275750 NA non-coding upstream 178077 3595721 ~ 3627754 (-)
G275826 NA non-coding upstream 189808 3607452 ~ 3614839 (-)
G275754 NA non-coding upstream 195109 3612753 ~ 3636263 (-)
G275828 NA non-coding upstream 196674 3614318 ~ 3633114 (-)
G275920 NA non-coding upstream 319010 3736654 ~ 3736958 (-)
G275699 NA other downstream 335957 2992504 ~ 3078168 (-)
CI01000069_02997434_03008924 NA other downstream 413692 2997275 ~ 3008924 (-)
CI01000069_02589498_02621318 SYT3 other downstream 783809 2589469 ~ 2621641 (-)
CI01000069_01645966_01647142 NA other downstream 1766799 1644522 ~ 1647326 (-)
G275178 NA other downstream 2468321 926923 ~ 945804 (-)
CI01000069_03768812_03787588 BRSK1 other upstream 348029 3765673 ~ 3787588 (-)
CI01000069_03804630_03807180 PRMT1.S, PRMT1 other upstream 386972 3804616 ~ 3807180 (-)
CI01000069_04932463_04940554 NA other upstream 1521877 4932144 ~ 4941471 (-)
CI01000069_00952894_00955774 NA other downstream 2457183 952361 ~ 955790 (-)

Expression


Co-expression Network